Phgdh (phosphoglycerate dehydrogenase) - Rat Genome Database

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Gene: Phgdh (phosphoglycerate dehydrogenase) Ictidomys tridecemlineatus
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Symbol: Phgdh
Name: phosphoglycerate dehydrogenase
RGD ID: 12549408
Description: ENCODES a protein that exhibits phosphoglycerate dehydrogenase activity (ortholog); INVOLVED IN G1 to G0 transition (ortholog); gamma-aminobutyric acid metabolic process (ortholog); glial cell development (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Synthase 2 Deficiency (ortholog); amino acid metabolic disorder (ortholog); Breast Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: D-3-phosphoglycerate dehydrogenase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505810,040,659 - 10,074,835 (-)NCBI
SpeTri2.0NW_0049366274,414,122 - 4,448,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Phgdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505810,040,659 - 10,074,835 (-)NCBI
SpeTri2.0NW_0049366274,414,122 - 4,448,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHGDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1119,648,411 - 119,744,218 (+)EnsemblGRCh38hg38GRCh38
GRCh381119,711,934 - 119,744,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371120,254,557 - 120,286,838 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,056,033 - 120,088,361 (+)NCBINCBI36hg18NCBI36
Build 341119,966,551 - 119,998,878NCBI
Celera1118,485,152 - 118,517,585 (+)NCBI
Cytogenetic Map1p12NCBI
HuRef1118,112,949 - 118,145,389 (+)NCBIHuRef
CHM1_11120,369,927 - 120,402,393 (+)NCBICHM1_1
Phgdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39398,220,487 - 98,247,285 (-)NCBIGRCm39mm39
GRCm39 Ensembl398,220,486 - 98,247,306 (-)Ensembl
GRCm38398,313,171 - 98,339,969 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl398,313,170 - 98,339,990 (-)EnsemblGRCm38mm10GRCm38
MGSCv37398,117,094 - 98,143,892 (-)NCBIGRCm37mm9NCBIm37
MGSCv36398,398,576 - 98,425,374 (-)NCBImm8
Celera399,712,302 - 99,738,644 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
Phgdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22185,906,964 - 185,936,160 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2185,906,966 - 185,935,944 (-)Ensembl
Rnor_6.02200,484,245 - 200,513,564 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2200,484,246 - 200,513,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02219,959,693 - 219,989,012 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42193,147,943 - 193,177,137 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12193,110,696 - 193,139,891 (-)NCBI
Celera2178,395,133 - 178,424,307 (-)NCBICelera
Cytogenetic Map2q34NCBI
Phgdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543522,757,454 - 22,803,123 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543522,757,473 - 22,803,123 (+)NCBIChiLan1.0ChiLan1.0
PHGDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11117,800,843 - 117,833,462 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1117,800,843 - 117,833,462 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0182,803,155 - 82,835,465 (-)NCBIMhudiblu_PPA_v0panPan3
PHGDH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11756,806,912 - 56,833,765 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1756,444,352 - 56,472,916 (+)NCBI
ROS_Cfam_1.01757,523,903 - 57,551,298 (+)NCBI
UMICH_Zoey_3.11756,560,319 - 56,586,083 (+)NCBI
UU_Cfam_GSD_1.01757,181,718 - 57,206,990 (+)NCBI
PHGDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4101,408,308 - 101,478,144 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14101,445,977 - 101,478,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24111,436,317 - 111,468,486 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHGDH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12014,045,395 - 14,075,935 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2014,045,346 - 14,076,177 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603816,675,443 - 16,706,180 (-)NCBIVero_WHO_p1.0
Phgdh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477215,473,609 - 15,514,392 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005334941   ⟹   XP_005334998
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505810,040,659 - 10,074,835 (-)NCBI
SpeTri2.0NW_0049366274,414,122 - 4,448,347 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334998 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3281178 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005334998   ⟸   XM_005334941
- UniProtKB: I3LZF2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001906 ENTREZGENE
Ensembl Protein ENSSTOP00000001699 ENTREZGENE
NCBI Gene Phgdh ENTREZGENE
UniProt I3LZF2 ENTREZGENE