Mfsd14a (major facilitator superfamily domain containing 14A) - Rat Genome Database

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Gene: Mfsd14a (major facilitator superfamily domain containing 14A) Ictidomys tridecemlineatus
Analyze
Symbol: Mfsd14a
Name: major facilitator superfamily domain containing 14A
RGD ID: 12548875
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); INVOLVED IN acrosome assembly (ortholog); sperm mitochondrion organization (ortholog); spermatid development (ortholog); ASSOCIATED WITH genetic disease (ortholog); maple syrup urine disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,406,448 - 110,442,553 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748211,561 - 250,272 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748211,620 - 247,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Mfsd14a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,406,448 - 110,442,553 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748211,561 - 250,272 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748211,620 - 247,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFSD14A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,038,095 - 100,083,377 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,038,095 - 100,083,377 (+)EnsemblGRCh38hg38GRCh38
GRCh371100,503,651 - 100,548,933 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,276,377 - 100,321,521 (+)NCBINCBI36Build 36hg18NCBI36
Build 341100,215,809 - 100,260,948NCBI
Celera198,759,548 - 98,805,814 (+)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef198,626,538 - 98,671,687 (+)NCBIHuRef
CHM1_11100,620,108 - 100,665,272 (+)NCBICHM1_1
T2T-CHM13v2.0199,886,211 - 99,931,496 (+)NCBIT2T-CHM13v2.0
Mfsd14a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,424,813 - 116,456,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,424,813 - 116,456,326 (-)EnsemblGRCm39 Ensembl
GRCm383116,631,164 - 116,662,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,631,164 - 116,662,677 (-)EnsemblGRCm38mm10GRCm38
MGSCv373116,334,082 - 116,365,595 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,623,168 - 116,654,554 (-)NCBIMGSCv36mm8
Celera3123,058,112 - 123,089,753 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.42NCBI
Mfsd14a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82207,264,081 - 207,305,880 (-)NCBIGRCr8
mRatBN7.22204,579,174 - 204,611,600 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,579,174 - 204,659,319 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2212,237,039 - 212,268,593 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02210,146,056 - 210,179,751 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,963,130 - 204,996,825 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,661,204 - 219,697,548 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,662,064 - 219,693,629 (-)EnsemblRnor6.0rn6Rnor6.0
Celera2197,071,828 - 197,103,270 (-)NCBICelera
Cytogenetic Map2q42NCBI
Mfsd14a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554354,810,603 - 4,830,775 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554354,810,919 - 4,831,829 (+)NCBIChiLan1.0ChiLan1.0
MFSD14A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,944,317 - 126,989,243 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11126,102,216 - 126,151,517 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01102,696,558 - 102,741,630 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11101,412,465 - 101,457,385 (+)NCBIpanpan1.1PanPan1.1panPan2
MFSD14A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,902,739 - 49,927,631 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,903,484 - 49,927,638 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha652,575,762 - 52,614,845 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0650,252,391 - 50,291,508 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl650,252,264 - 50,291,527 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,944,062 - 49,983,203 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,923,070 - 49,962,193 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0650,354,808 - 50,393,919 (-)NCBIUU_Cfam_GSD_1.0
MFSD14A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4118,049,105 - 118,090,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14118,049,094 - 118,090,374 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24129,622,259 - 129,650,143 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MFSD14A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12033,254,470 - 33,277,021 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603824,754,769 - 24,802,716 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mfsd14a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248572,835,403 - 2,881,595 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248572,835,350 - 2,881,595 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005339680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000013446   ⟹   ENSSTOP00000012048
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936748211,561 - 250,272 (+)Ensembl
RefSeq Acc Id: XM_005339680   ⟹   XP_005339737
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058110,406,448 - 110,442,553 (+)NCBI
SpeTri2.0NW_004936748211,620 - 247,710 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339737 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012048.2
GenBank Protein KAG3283666 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005339737   ⟸   XM_005339680
- UniProtKB: I3ML11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012048   ⟸   ENSSTOT00000013446
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013436 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013446.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
  Tet-R_TetA/multi-R_MdtG UniProtKB/TrEMBL
NCBI Gene Mfsd14a ENTREZGENE
PANTHER HIPPOCAMPUS ABUNDANT TRANSCRIPT 1 PROTEIN UniProtKB/TrEMBL
  MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PRINTS TCRTETA UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt I3ML11 ENTREZGENE, UniProtKB/TrEMBL