Pmm1 (phosphomannomutase 1) - Rat Genome Database

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Gene: Pmm1 (phosphomannomutase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Pmm1
Name: phosphomannomutase 1
RGD ID: 12548550
Description: ENCODES a protein that exhibits isomerase activity (inferred); metal ion binding (inferred); phosphomannomutase activity (inferred); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); neuronal cell body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphomannomutase 1, transcript variant X1; phosphomannomutase 1, transcript variant X2; phosphomannomutase 1, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,347,295 - 7,357,622 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492357,665 - 372,008 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936492357,732 - 368,042 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pmm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,347,295 - 7,357,622 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492357,665 - 372,008 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936492357,732 - 368,042 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,576,900 - 41,589,840 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,576,900 - 41,589,871 (-)EnsemblGRCh38hg38GRCh38
GRCh372241,972,904 - 41,985,844 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,302,858 - 40,315,759 (-)NCBINCBI36Build 36hg18NCBI36
Build 342240,297,411 - 40,310,313NCBI
Celera2225,779,317 - 25,792,298 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2224,938,706 - 24,951,582 (-)NCBIHuRef
CHM1_12241,933,029 - 41,946,009 (-)NCBICHM1_1
T2T-CHM13v2.02242,055,771 - 42,068,712 (-)NCBIT2T-CHM13v2.0
Pmm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,835,307 - 81,845,131 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,835,309 - 81,845,131 (-)EnsemblGRCm39 Ensembl
GRCm381581,951,106 - 81,960,930 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,951,108 - 81,960,930 (-)EnsemblGRCm38mm10GRCm38
MGSCv371581,781,536 - 81,791,297 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,778,367 - 81,788,119 (-)NCBIMGSCv36mm8
Celera1584,073,154 - 84,082,920 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.3NCBI
Pmm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,346,767 - 115,357,137 (-)NCBIGRCr8
mRatBN7.27113,466,632 - 113,477,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,466,632 - 113,477,022 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7115,229,302 - 115,239,546 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,452,796 - 117,463,040 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,422,239 - 117,432,483 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,183,504 - 123,193,874 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,183,506 - 123,193,761 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,158,885 - 123,169,142 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,323,808 - 120,334,065 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17120,358,039 - 120,368,295 (-)NCBI
Celera7109,782,496 - 109,792,754 (-)NCBICelera
Cytogenetic Map7q34NCBI
Pmm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541327,090,291 - 27,097,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541327,090,291 - 27,097,088 (-)NCBIChiLan1.0ChiLan1.0
PMM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,408,349 - 51,422,735 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,107,618 - 54,120,592 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,472,067 - 22,485,029 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,558,733 - 40,571,811 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,558,733 - 40,571,811 (-)Ensemblpanpan1.1panPan2
PMM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,699,476 - 23,706,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,700,387 - 23,706,547 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,629,920 - 23,639,439 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,442,035 - 24,451,570 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,442,045 - 24,451,565 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,158,621 - 24,168,390 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,480,091 - 24,489,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,654,164 - 24,663,696 (+)NCBIUU_Cfam_GSD_1.0
PMM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,964,999 - 6,975,904 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.156,964,999 - 6,975,904 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,336,774 - 4,347,697 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PMM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,115,717 - 24,128,869 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1924,118,481 - 24,128,830 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045101,285,073 - 101,296,826 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pmm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,039,789 - 7,047,069 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247527,039,781 - 7,047,069 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000026793   ⟹   ENSSTOP00000018730
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936492357,783 - 367,665 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000042647   ⟹   ENSSTOP00000028918
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936492357,665 - 372,008 (+)Ensembl
RefSeq Acc Id: XM_005322201   ⟹   XP_005322258
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049457,347,297 - 7,357,622 (+)NCBI
SpeTri2.0NW_004936492357,738 - 368,042 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724389   ⟹   XP_021580064
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049457,347,295 - 7,357,622 (+)NCBI
SpeTri2.0NW_004936492357,732 - 368,042 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724390   ⟹   XP_021580065
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049457,347,326 - 7,357,622 (+)NCBI
SpeTri2.0NW_004936492357,802 - 368,042 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005322258   ⟸   XM_005322201
- Peptide Label: isoform X1
- UniProtKB: A0A287D5V8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580064   ⟸   XM_021724389
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021580065   ⟸   XM_021724390
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSSTOP00000018730   ⟸   ENSSTOT00000026793
Ensembl Acc Id: ENSSTOP00000028918   ⟸   ENSSTOT00000042647


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026025 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026793.2 UniProtKB/TrEMBL
  ENSSTOT00000042647.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1240.20 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
InterPro HAD-like_sf UniProtKB/TrEMBL
  HAD-SF_hydro_IIB UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  PMM UniProtKB/TrEMBL
  PMM_cap UniProtKB/TrEMBL
NCBI Gene Pmm1 ENTREZGENE
PANTHER PHOSPHOMANNOMUTASE 1 UniProtKB/TrEMBL
  PTHR10466 UniProtKB/TrEMBL
Pfam PMM UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
UniProt A0A287D5V8 ENTREZGENE, UniProtKB/TrEMBL
  I3N2Y4_ICTTR UniProtKB/TrEMBL