Sars2 (seryl-tRNA synthetase 2, mitochondrial) - Rat Genome Database

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Gene: Sars2 (seryl-tRNA synthetase 2, mitochondrial) Ictidomys tridecemlineatus
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Symbol: Sars2
Name: seryl-tRNA synthetase 2, mitochondrial
RGD ID: 12548450
Description: ENCODES a protein that exhibits aminoacyl-tRNA ligase activity (inferred); ATP binding (inferred); ligase activity (inferred); INVOLVED IN selenocysteinyl-tRNA(Sec) biosynthetic process (inferred); seryl-tRNA aminoacylation (inferred); tRNA aminoacylation for protein translation (inferred); ASSOCIATED WITH HUPRA Syndrome (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine--tRNA ligase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,433,577 - 13,443,664 (-)NCBI
SpeTri2.0NW_0049366611,861,646 - 1,871,707 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Sars2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,433,577 - 13,443,664 (-)NCBI
SpeTri2.0NW_0049366611,861,646 - 1,871,707 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SARS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381938,915,266 - 38,930,763 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1938,915,266 - 38,930,763 (-)EnsemblGRCh38hg38GRCh38
GRCh371939,405,906 - 39,421,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,097,746 - 44,113,376 (-)NCBINCBI36hg18NCBI36
Build 341944,097,746 - 44,113,376NCBI
Celera1936,208,338 - 36,223,965 (-)NCBI
Cytogenetic Map19q13.2NCBI
HuRef1935,852,611 - 35,868,135 (-)NCBIHuRef
CHM1_11939,406,299 - 39,421,931 (-)NCBICHM1_1
T2T-CHM13v2.01941,719,237 - 41,734,732 (-)NCBI
Sars2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,441,393 - 28,453,304 (+)NCBIGRCm39mm39
GRCm39 Ensembl728,441,417 - 28,453,296 (+)Ensembl
GRCm38728,741,957 - 28,753,879 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,741,992 - 28,753,871 (+)EnsemblGRCm38mm10GRCm38
MGSCv37729,527,010 - 29,538,874 (+)NCBIGRCm37mm9NCBIm37
MGSCv36728,450,756 - 28,462,615 (+)NCBImm8
Celera723,302,398 - 23,314,649 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.91NCBI
Sars2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2184,028,972 - 84,040,725 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl184,028,986 - 84,040,725 (+)Ensembl
Rnor_6.0186,923,769 - 86,935,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,923,591 - 86,935,904 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0188,104,901 - 88,116,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,848,250 - 83,859,874 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1183,926,360 - 83,937,985 (+)NCBI
Celera178,421,419 - 78,432,891 (+)NCBICelera
Cytogenetic Map1q21NCBI
Sars2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468603,778 - 613,475 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955468603,778 - 613,475 (+)NCBIChiLan1.0ChiLan1.0
SARS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11944,571,434 - 44,586,472 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,565,214 - 44,568,594 (-)NCBIpanpan1.1panPan2
PanPan1.1 Ensembl1944,571,434 - 44,586,472 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1944,565,214 - 44,568,594 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01936,015,983 - 36,037,404 (-)NCBIMhudiblu_PPA_v0panPan3
SARS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,192,574 - 114,202,385 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,594,261 - 113,604,028 (+)NCBI
ROS_Cfam_1.01114,792,488 - 114,802,242 (+)NCBI
ROS_Cfam_1.0 Ensembl1114,792,518 - 114,802,238 (+)Ensembl
UMICH_Zoey_3.11114,350,232 - 114,360,002 (+)NCBI
UNSW_CanFamBas_1.01113,983,406 - 113,993,172 (+)NCBI
UU_Cfam_GSD_1.01114,979,139 - 114,988,912 (+)NCBI
SARS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,716,679 - 47,728,310 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1647,717,363 - 47,728,394 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,266,872 - 43,276,311 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SARS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,536,160 - 33,552,160 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl633,536,498 - 33,552,000 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607311,558,681 - 11,574,652 (-)NCBIVero_WHO_p1.0
Sars2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,269,615 - 12,280,558 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462479412,269,773 - 12,280,537 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021734019   ⟹   XP_021589694
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366611,861,646 - 1,871,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040279871   ⟹   XP_040135805
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934913,433,577 - 13,443,664 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040135805 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3256003 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021589694   ⟸   XM_021734019
- Sequence:
RefSeq Acc Id: XP_040135805   ⟸   XM_040279871
Protein Domains
AA_TRNA_LIGASE_II


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027120 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000015399 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022346 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.40 UniProtKB/TrEMBL
  3.30.930.10 UniProtKB/TrEMBL
InterPro aa-tRNA-synt_IIb UniProtKB/TrEMBL
  aa-tRNA-synth_II UniProtKB/TrEMBL
  aa-tRNA-synth_II/BPL/LPL UniProtKB/TrEMBL
  Ser-tRNA-ligase_type_1 UniProtKB/TrEMBL
  SerRS_1_N_sf UniProtKB/TrEMBL
NCBI Gene Sars2 ENTREZGENE
PANTHER PTHR11778 UniProtKB/TrEMBL
Pfam tRNA-synt_2b UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_II UniProtKB/TrEMBL
Superfamily-SCOP SSF55681 UniProtKB/TrEMBL
UniProt I3MTF4_ICTTR UniProtKB/TrEMBL