Wdr83os (WD repeat domain 83 opposite strand) - Rat Genome Database

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Gene: Wdr83os (WD repeat domain 83 opposite strand) Ictidomys tridecemlineatus
Analyze
Symbol: Wdr83os
Name: WD repeat domain 83 opposite strand
RGD ID: 12547860
Description: ENCODES a protein that exhibits protein folding chaperone (inferred); INVOLVED IN multi-pass transmembrane protein insertion into ER membrane (inferred); protein folding (inferred); protein insertion into ER membrane (inferred); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); multi-pass translocon complex (ortholog); protein folding chaperone complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,558,842 - 208,560,277 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,794,432 - 1,795,788 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,794,430 - 1,795,811 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wdr83os
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,558,842 - 208,560,277 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,794,432 - 1,795,788 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,794,430 - 1,795,811 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR83OS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,668,073 - 12,669,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,668,073 - 12,669,415 (-)EnsemblGRCh38hg38GRCh38
GRCh371912,778,887 - 12,780,229 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,639,887 - 12,641,449 (-)NCBINCBI36Build 36hg18NCBI36
Celera1912,668,595 - 12,670,179 (-)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,351,969 - 12,353,553 (-)NCBIHuRef
CHM1_11912,779,386 - 12,780,970 (-)NCBICHM1_1
T2T-CHM13v2.01912,792,571 - 12,793,913 (-)NCBIT2T-CHM13v2.0
Wdr83os
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,807,592 - 85,808,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,807,369 - 85,808,968 (+)EnsemblGRCm39 Ensembl
GRCm38885,080,963 - 85,082,339 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,080,740 - 85,082,339 (+)EnsemblGRCm38mm10GRCm38
MGSCv37887,604,862 - 87,606,238 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,971,068 - 87,972,444 (+)NCBIMGSCv36mm8
Celera889,375,429 - 89,376,803 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.55NCBI
Wdr83os
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81939,980,247 - 39,981,619 (-)NCBIGRCr8
mRatBN7.21923,075,373 - 23,076,745 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,075,376 - 23,076,894 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1929,897,990 - 29,899,362 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,552,354 - 30,553,726 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,775,035 - 32,776,407 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01926,194,336 - 26,195,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1926,194,465 - 26,195,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01937,169,964 - 37,171,460 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,731,659 - 24,733,024 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1922,633,343 - 22,634,708 (-)NCBICelera
Cytogenetic Map19q11NCBI
Wdr83os
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541531,772,401 - 31,773,916 (-)NCBIChiLan1.0ChiLan1.0
WDR83OS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,596,982 - 17,598,402 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,597,559 - 16,598,979 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,230,204 - 12,231,881 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11912,975,314 - 12,976,896 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1912,975,314 - 12,976,896 (-)Ensemblpanpan1.1panPan2
WDR83OS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,443,893 - 49,445,342 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,443,951 - 49,445,330 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,317,346 - 49,318,922 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,962,443 - 49,964,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,962,635 - 49,964,014 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,173,239 - 49,174,814 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,599,980 - 49,601,556 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,842,292 - 49,843,868 (+)NCBIUU_Cfam_GSD_1.0
WDR83OS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,325,992 - 66,328,004 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,312,920 - 66,328,000 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,692,103 - 66,705,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR83OS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,356,542 - 11,358,109 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,356,544 - 11,357,884 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,439,378 - 8,440,952 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr83os
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901309,058 - 310,686 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901309,058 - 310,663 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005336189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000006862   ⟹   ENSSTOP00000006135
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366591,794,432 - 1,795,788 (-)Ensembl
RefSeq Acc Id: XM_005336189   ⟹   XP_005336246
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118208,558,842 - 208,560,277 (+)NCBI
SpeTri2.0NW_0049366591,794,430 - 1,795,811 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336246 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006135.3
GenBank Protein KAG3280225 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005336246   ⟸   XM_005336189
- UniProtKB: I3M8N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000006135   ⟸   ENSSTOT00000006862


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006874 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006862.3 UniProtKB/TrEMBL
InterPro ASTER UniProtKB/TrEMBL
NCBI Gene Wdr83os ENTREZGENE
PANTHER PAT COMPLEX SUBUNIT ASTERIX UniProtKB/TrEMBL
  PTHR13193 UniProtKB/TrEMBL
Pfam UPF0139 UniProtKB/TrEMBL
UniProt I3M8N9 ENTREZGENE, UniProtKB/TrEMBL