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Gene: Vcl (vinculin) Ictidomys tridecemlineatus

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Symbol:

Vcl

Name:

vinculin

RGD ID:

12547372

Description:

ENCODES a protein that exhibits actin binding (ortholog); molecular adaptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN axon extension (ortholog); cell adhesion (ortholog); lamellipodium assembly (ortholog); PARTICIPATES IN E-cadherin signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); autism spectrum disorder (ortholog); cardiac arrest (ortholog); FOUND IN actin filament (ortholog); intercalated disc (ortholog); membrane raft (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

vinculin, transcript variant X1; vinculin, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VCL (vinculin)	NCBI	Ortholog
Mus musculus (house mouse):	Vcl (vinculin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Vcl (vinculin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vcl (vinculin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VCL (vinculin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VCL (vinculin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VCL (vinculin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VCL (vinculin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vcl (vinculin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	56,558,734 - 56,670,307 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	5,050,900 - 5,163,086 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	5,051,077 - 5,163,036 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Coronary Syndrome (ISO)

autism spectrum disorder (ISO)

cardiac arrest (ISO)

cardiomyopathy (ISO)

congestive heart failure (ISO)

dilated cardiomyopathy (ISO)

dilated cardiomyopathy 1B (ISO)

dilated cardiomyopathy 1S (ISO)

dilated cardiomyopathy 1W (ISO)

Dilated Cardiomyopathy with Left Ventricular Noncompaction (ISO)

familial hypertrophic cardiomyopathy (ISO)

Genitopatellar Syndrome (ISO)

Hirschsprung's disease (ISO)

hypertrophic cardiomyopathy (ISO)

hypertrophic cardiomyopathy 1 (ISO)

hypertrophic cardiomyopathy 15 (ISO)

hypertrophic cardiomyopathy 2 (ISO)

long QT syndrome (ISO)

Neoplasm Recurrence, Local (ISO)

osteoporosis (ISO)

short QT syndrome (ISO)

Ventricular Fibrillation, Paroxysmal Familial, 1 (ISO)

Ventricular Tachycardia (ISO)

Wolff-Parkinson-White syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction assembly (IEA)

apical junction assembly (IEA)

axon extension (IEA,ISO)

cell adhesion (IEA,ISO)

epithelial cell-cell adhesion (IEA)

lamellipodium assembly (IEA,ISO)

morphogenesis of an epithelium (IEA)

platelet aggregation (ISO)

protein localization to cell surface (IEA)

regulation of cell migration (IEA,ISO)

regulation of establishment of endothelial barrier (IEA)

regulation of focal adhesion assembly (IEA)

regulation of protein localization to adherens junction (IEA)

Cellular Component

actin cytoskeleton (IEA)

actin filament (ISO)

adherens junction (IEA)

anchoring junction (IEA)

cell-cell contact zone (IEA)

cell-cell junction (IEA)

costamere (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

fascia adherens (IEA)

focal adhesion (IEA)

intercalated disc (ISO)

membrane (IEA)

membrane raft (ISO)

plasma membrane (IEA)

podosome (IEA)

podosome ring (IEA)

protein-containing complex (IEA)

sarcolemma (IEA)

stress fiber (ISO)

Z disc (ISO)

Molecular Function

actin binding (IEA,ISO)

actin filament binding (IEA)

alpha-catenin binding (IEA)

dystroglycan binding (IEA)

molecular adaptor activity (ISO)

protein binding (ISO)

small GTPase binding (ISO)

structural molecule activity (IEA)

ubiquitin protein ligase binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

E-cadherin signaling pathway (ISO)

vascular endothelial growth factor signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Vcl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	56,558,734 - 56,670,307 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	5,050,900 - 5,163,086 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	5,051,077 - 5,163,036 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VCL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	73,998,116 - 74,121,363 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	73,995,193 - 74,121,363 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	75,757,874 - 75,881,121 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	75,427,878 - 75,549,924 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	75,427,877 - 75,549,918	NCBI
Celera	10	69,043,066 - 69,165,189 (+)	NCBI		Celera
Cytogenetic Map	10	q22.2	NCBI
HuRef	10	69,753,196 - 69,875,221 (+)	NCBI		HuRef
CHM1_1	10	76,039,663 - 76,161,889 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	74,869,505 - 74,992,765 (+)	NCBI		T2T-CHM13v2.0

Vcl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	20,979,436 - 21,083,744 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	20,979,466 - 21,083,744 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	20,929,383 - 21,033,676 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	20,929,398 - 21,033,676 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	21,748,655 - 21,852,895 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	19,717,985 - 19,822,225 (+)	NCBI		MGSCv36	mm8
Celera	14	17,309,615 - 17,412,913 (+)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	11.53	NCBI

Vcl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,315,069 - 3,404,891 (-)	NCBI		GRCr8
mRatBN7.2	15	3,265,776 - 3,355,586 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,265,815 - 3,355,606 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	3,275,988 - 3,365,714 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	4,662,476 - 4,752,199 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,274,793 - 3,364,523 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	3,455,211 - 3,544,738 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	3,455,211 - 3,544,702 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	3,433,521 - 3,522,441 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	3,478,214 - 3,576,911 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	3,480,194 - 3,654,123 (-)	NCBI
Celera	15	1,235,777 - 1,325,408 (+)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

Vcl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	17,813,007 - 17,920,253 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	17,812,998 - 17,920,253 (-)	NCBI	ChiLan1.0	ChiLan1.0

VCL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	86,149,471 - 86,269,838 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	86,154,475 - 86,275,165 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	70,521,259 - 70,641,917 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	73,191,384 - 73,311,301 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	73,191,375 - 73,311,296 (+)	Ensembl	panpan1.1		panPan2

VCL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	24,404,279 - 24,518,977 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	24,404,319 - 24,518,633 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	24,541,842 - 24,656,546 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	24,685,066 - 24,802,488 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	24,685,097 - 24,802,479 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	24,581,947 - 24,697,844 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	24,782,214 - 24,897,783 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	25,137,362 - 25,252,305 (+)	NCBI		UU_Cfam_GSD_1.0

VCL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	76,700,173 - 76,811,869 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	76,700,143 - 76,811,875 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	82,826,487 - 82,938,103 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	14	q2.5-q2.9	NCBI

VCL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	57,253,219 - 57,375,947 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	57,255,166 - 57,376,028 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	17,825,838 - 17,950,842 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vcl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	7,484,773 - 7,590,108 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	7,484,759 - 7,590,108 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005325893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005325894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000012872 ⟹ ENSSTOP00000011537

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936521	5,050,900 - 5,163,086 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000031279 ⟹ ENSSTOP00000028012

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936521	5,050,900 - 5,162,997 (-)	Ensembl

RefSeq Acc Id:

XM_005325893 ⟹ XP_005325950

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	56,558,734 - 56,670,307 (-)	NCBI
SpeTri2.0	NW_004936521	5,051,077 - 5,163,036 (-)	NCBI

Sequence:

show sequence

GCTGGTTACGCCAAGGGAAGCCCGGACTCTAGTCGCTGCTCCTACTCAGTCTCTCCGCCGGCTC
CCGGCCCCGCTGATCCCAGTTCTGTGGCCCGCGGTTCGCCGCCCCGCAAGCCGCCACGATGCCG
GTGTTTCATACACGCACGATTGAGAGCATTCTGGAGCCGGTGGCGCAGCAGATCTCGCACCTGG
TGATTATGCACGAGGAGGGCGAGGTGGACGGCAAAGCCATCCCTGACCTCACCGCGCCCGTGGC
CGCCGTGCAAGCGGCCGTCAGCAACCTCGTCCGGGTTGGAAAAGAGACTGTTCAAACTACCGAG
GATCAGATATTGAAGAGAGATATGCCACCCGCATTTATTAAGGTTGAGAATGCTTGCACCAAGC
TTGTCCAAGCAGCCCAGATGCTTCAGTCCGACCCTTACTCAGTGCCTGCTCGAGATTATCTAAT
TGATGGGTCAAGGGGCATCCTCTCTGGCACATCAGATCTACTCCTTACCTTCGATGAGGCTGAG
GTTCGTAAAATTATCCGAGTTTGCAAAGGAATTTTGGAATATCTTACAGTGGCAGAGGTCGTGG
AGACTATGGAAGATTTGGTCACTTATACAAAGAATCTTGGGCCAGGAATGACTAAGATGGCCAA
GATGATTGATGAGAGACAGCAGGAGTTGACTCACCAGGAGCACCGAGTAATGTTGGTGAACTCA
ATGAACACTGTGAAAGAGTTGCTTCCAGTTCTCATTTCAGCTATGAAGATTTTTGTAACAACTA
AAAATTCAAAAAACCAAGGAATAGAAGAAGCTTTGAAAAATCGCAATTTTACTGTGGAAAAGAT
GAGTGCTGAAATTAATGAGATCATCCGTGTATTACAACTCACTTCTTGGGATGAAGATGCCTGG
GCCAGCAAAGACACTGAAGCCATGAAGAGAGCATTGGCCTCCATAGACTCCAAACTGAATCAGG
CCAAAGGTTGGCTCCGTGACCCCAGTGCCTCCCCAGGGGATGCTGGTGAACAGGCCATCAGGCA
GATCTTAGATGAAGCTGGAAAAGTTGGTGAACTTTGTGCAGGCAAGGAACGCAGGGAGATCCTG
GGAACCTGCAAAATGCTAGGGCAGATGACTGATCAAGTGGCTGACCTCCGAGCTAGAGGTCAAG
GAGCTTCACCAGTGGCCATGCAGAAAGCCCAGCAGGTATCTCAAGGTCTAGATGTGCTCACAGC
AAAGGTGGAGAATGCAGCTCGAAAGTTGGAAGCCATGACAAACTCAAAGCAGAGCATAGCAAAG
AAGATTGATGCTGCTCAGAATTGGCTTGCAGATCCAAATGGTGGACCTGAAGGAGAAGAACAGA
TCCGAGGGGCTTTGGCTGAAGCTCGGAAAATAGCAGAATTGTGTGATGATCCTAAAGAGAGAGA
TGACATTCTTCGTTCCCTTGGAGAAATATCTGCTCTGACTTCTAAATTAGCAGATTTACGAAGG
CAGGGGAAAGGAGATTCCCCAGAGGCTCGAGCATTGGCCAAACAGGTGGCCACGGCCCTTCAGA
ACCTGCAGACCAAAACCAACAGGGCTGTGGCAAACAGCAGACCTGCCAAAGCAGCTGTCCACCT
TGAGGGCAAAATTGAGCAAGCACAGCGATGGATTGATAATCCTACAGTGGATGACCGGGGAGTC
GGTCAGGCTGCTATCCGGGGGCTTGTGGCTGAAGGACATCGTCTGGCTAATGTCATGATGGGGC
CTTATCGTCAAGATCTTCTTGCCAAGTGTGACCGTGTGGACCAGTTGACAGCTCAGCTGGCTGA
CCTGGCTGCCAGAGGGGAAGGGGAAAGTCCTCAGGCCAGAGCACTTGCATCACAGCTCCAAGAC
TCCTTAAAGGATCTGAAAGCCAGGATGCAGGAGGCTATGACTCAGGAGGTGTCAGATGTTTTCA
GTGATACCACAACTCCTATCAAGCTATTGGCAGTGGCGGCTACTGCCCCTCCTGATGCACCCAA
TAGGGAAGAGGTATTTGATGAGAGGGCAGCAAACTTTGAAAACCATTCAGGAAGGCTTGGAGCT
ACAGCAGAGAAGGCGGCTGCTGTTGGTACTGCTAATAAATCAACAGTGGAAGGCATTCAGGCAT
CAGTGAAGACTGCTCGAGAACTCACACCCCAGGTCATCTCAGCTGCTCGCATCTTACTGAGGAA
CCCTGGAAATCAAGCCGCTTGTGAACATTTTGAAACCATGAAGAACCAGTGGATTGATAATGTT
GAAAAAATGACAGGGCTGGTGGACGAAGCCATTGATACCAAATCTCTGTTGGATGCTTCTGAAG
AAGCAATTAAAAAAGATCTGGACAAGTGTAAGGTAGCCATGGCCAACATTCAGCCTCAGATGCT
GGTTGCTGGGGCAACAAGCATTGCTCGTCGGGCCAACCGAATCCTGCTGGTGGCGAAGAGGGAG
GTGGAGAACTCTGAGGATCCCAAGTTCCGTGAGGCTGTGAAAGCTGCCTCTGATGAATTGAGCA
AAACAATCTCCCCTATGGTGATGGATGCAAAGGCTGTGGCTGGAAACATTTCTGACCCTGGCCT
GCAAAAGAGCTTCCTGGACTCTGGATATCGGATCCTGGGAGCTGTGGCCAAGGTCAGAGAAGCC
TTCCAACCTCAGGAACCTGACTTCCCACCTCCTCCACCTGACCTTGAACAGCTCCGACTAACAG
ATGAGCTTGCTCCTCCCAAACCACCTCTGCCTGAGGGTGAGGTCCCTCCACCCAGGCCCCCACC
ACCAGAGGAAAAGGATGAAGAGTTTCCTGAGCAGAAAGCCGGGGAGGTGATTAATCAGCCAATG
ATGATGGCTGCCAGGCAGCTCCATGATGAAGCTCGAAAATGGTCCAGCAAGCCGGGTATCCCAG
CTGCTGAGGTGGGTATAGGAGTTGTAGCTGAGGCAGATGCGGTTGATGCTGTTGGGTTCTCTGT
CCCCTCTGACATGGAAGACGATTACGAACCTGAGCTACTGTTAATGCCATCCAATCAGCCTGTC
AACCAGCCCATTCTGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGGTCTAGTAAGG
GCAATGATATCATTGCAGCAGCCAAGCGCATGGCTCTGCTGATGGCTGAGATGTCTCGGCTGGT
AAGAGGGGGCAGTGGTACCAAGCGGGCACTCATTCAGTGTGCCAAGGACATTGCCAAGGCCTCA
GATGAAGTGACTCGGTTGGCCAAGGAAGTTGCCAAGCAGTGCACAGATAAGCGGATTAGAACCA
ACCTCTTACAGGTATGTGAGCGAATCCCAACTATAAGCACCCAGCTCAAAATCCTGTCTACTGT
AAAGGCCACCATGCTGGGCCGGACCAACATCAGTGACGAGGAATCTGAGCAGGCCACAGAGATG
CTAGTTCACAATGCCCAGAACCTCATGCAGTCCGTGAAGGAGACTGTAAGAGAAGCAGAAGCTG
CTTCAATCAAAATTCGAACAGATGCTGGATTTACACTGCGCTGGGTCAGAAAGACTCCCTGGTA
CCAGTAGGTACCCAGCCAAACCTGGCTGGTACGGAAACCCCTACTGAAAAGAAGAATAATCCGA
GTTCCAGAAGCCATCTGGAGTTGCTGGGGGTTGAAAGCTACATCCCAGCCTGACATATCAGAAA
GGAATGGGGTCTCTTCACATTACAAACCATTTATACTCTTTGTCATGGACACTTTGAAATATGT
CTCCATATAAATTCTGTATTCTCAAACACAGTTAAACTCATGTATACTCTGTCTCAATAGGTGG
ACTGGGTTTCTAGCCCATGGACTTCACATAAGCTCAGAATTTAAGAGTGAAAACACTAGCCAGA
CACCCTAGGGGACATTTCCCTCTTGTTTCCTTTACACCAGCCAGTCAGTTAAGAAAATCTCTCT
GCTTCCAAAAAATTGTTTGGGCTTTCCATGTTGCTGCTGACCCCGCCTGCCCTGGGTTGTGCTA
CCTGGGTCCTTTTCAGAAGTGAGCTTTGCTGCTGCAGGAAAAGGTAGCCTTTGGGAACCCCAAC
ATATAGGCCTGGATTCATTTCCTGCCTCTCTCCAATTTAATTCAAGTTTCCACACACTAGCAAA
CTTCACTATCAGGAGGAAATCACAGAATCATGATTCTGTCTTTATTATGCCTCTGAGCAATGTC
TGTGCTAAGGAAACTTCTTGTCCCATGGCAGTCCTCAGCCTGCCAAGGTAACCATCCCATGAAT
ACACTGTGTGCCCTGGTGCTCTCTGTCACTAGAGGGGCAGAGTAGCCAGAGTGTGGCCCTGCCC
ATCTTCCCAAGGGGGTCATGCCCAGGTGTTCCATGCTTTGTCACTGCCTGCAAAGTCTGTGCTG
AGGACTTATCATTCATTCTTAGCTCTTTATTGTTCTTTTTTAAGCTGAAATGCTGCATTTAATT
TTTAACCAAATCATGTTCTGGCTTTTGTAGTCTTCCCCTAAACCCTTCCTAAATAAGATTTTTA
AATATATGTAGGTGTTCTTTCTTTTCTTTTTTGGGAAATTGGAGTCTCACTATGTTGCCAAGCC
TGGTCTCAAACTCCTGGGTTCAAGGGATACTACTGTCTTGACTTCTTGAATAGATGGGACTACA
GGCATATGTCACTATACTTCGGTTTGTATGTAATTTCGAAAGATCCTTTTTATCCTTTTGAAAT
TCAGTTCATAAGAATTAGTACTAGACCTCTGAGATTGTCTAATGAAAAGGCAATCCTGTTAAAG
GACACTTCTATCTAAGGGAGAGTGGTATTTGCAGACTAGAATTTGAATGCTTCTGGGACTAAAT
CAATGGTAAATACTCCTGGAATTCCTACTTCCCTTCAACCAACTAAACCAAGCCCCTTTATACT
CTCCTAAATATAATTGAAAATAATGAGCATAATATTTAATTATCACCATAGTAAATTTCCTATT
ATGCAAAGTTAAAAGGCAATTTTTCCTCCCTTCCCCCCGACACTTATCACTGCTGCCGAAGCAT
TCTCCAGCACGTAAACCATATTTCTTTCCCAACCCCAAATGAAAAAAGTAAAGGAGTGAGACCC
TTTGTGTAAATATGCTTTCCTTTCACCCCCAATGTGTGTTAGATCCCACCATCAAATGTATAGC
ACTTGTCTTAAGGTGGTCCTGCACACTCAGGCTACCTCTATTTCCTTTTAACTGATAAAAGATT
ATTTTAAGGCCCTCAGCATATTTGTATAATTGCTTACCTGATATAAATGCAATATTAATGCCTT
TAAAGTATGAATCTATGCCAAAGATCACCTTTTGTTTTACTGAAGATTACTTAGAAGAAATAAG
AAAAATCTCTGTTCTTCAAGTTCTTCTGGTGTTGAGACACTGGTTTTACACTTTATGCCAGATG
TGCTTTTCTCTAACAACAGTGCTCAAGACACAGTGAAGCAAACAAAACAAAACAAATCCCTGAA
TGGTGGAGGTGTCACCACTTAAAAAAAAAAAATACATTTGTAAGCTAGGATTTGTTATATGCAA
ATATTTTCTGCTTCCTCTTTTTTCTGTTTAAAACAATAAAATGCATTTGTATAAATAATGCTCT
AAAGTTGGATGTTATTTTAGTAAGAACTTTTAGGTCAAGTTTTTCCTTTATTTTTGAAGAATAG
CCAATTAAACTAATCCTTAAGACCTGGAAACTAAAGATGTAGAAATCGACAATAGTATTTTAAC
TTAACAAGGATCTGTGTGATAAAGGACAACTTTGGGGATTATATACTAGAAGTAGCAGTGACAA
AGGTTAACAGAAGGCAGAAAGCAGCCAGATGATATAGATCACCCACTGGTTGAAGAACTCTTTC
TATTTAATAGGAATGACCATCACTATCCCTTAAAAAGCCGACGTTATTAAATGTGCAGAACCAC
AAATCCATTTTTTTATATTCTAAAATTCAGCATAGGAAGGTTCTCAAGGACCTACCAGGGCTCT
GGGGCAGAACAAGCTTTTGGAGACATATGCCTCTTCTTAAGCCCCGACTAGATCAGTACTAGGA
GATTTTTAAAAAATATTTTTAATTGTAGATGGACACAACATCTTTATTTTTTTAATATGGTACT
GAGAATTGAACTCAGTGCCTCACACATGCTAGGCAAGTGCTCTACCACTGAGCCACAATCTCAG
CCCACACTAGGAGATTCTTGGACAGAGCTGGAACATAACAGTTTTTGCCTGATTTTTCTAGATC
TGCAAAGGTTAAATATCATTAAAGGTTGAAATGTGGGCTGAGGCTGTAGCTCACTGATAGGCTG
CTTGCCTAGCACGTGTGATACACTGGGTTCGATCCTTGGTACCACATATAGAAATATAAAGTCA
TGCTGTCCATCTACAACTACTTTAAAAAAAAAAAAGTGATACTTAAAAGTGTTGCTAACTGCAT
TTATCACCTACCTACAAGAGCTTCCAACCATACAGGCAGATTCTAGCCTGCTTGAATTAAATAG
AAATGTCCAAAGCTATTAATTAGGGCAGCAATCTCTAACATTGCCCCATTTCTGCTATTTACCT
TATGTTCACTGCTGCATTGTAGTTAGTTTTCACAAATCAGTTGCCTCTAAGGACAATAAGATCA
GCACATTCCAAGAGTTCTTCTATAACACTATTTAAGGAATATACCTACCAGATGAATGCCCTCT
GAATACAATGATGGGGACTTCATCAAGCAGAAACTAAACATCTACTTTCATTTGCTCTTAGGAT
ATACTCCTTTCACAACTTGGAAAAAGGGAATATTATAGGATTAGCTGGACCTCTGTGCTTAGTA
AGTATTCTAATATTACTGA

hide sequence

RefSeq Acc Id:

XM_005325894 ⟹ XP_005325951

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	56,558,734 - 56,670,306 (-)	NCBI
SpeTri2.0	NW_004936521	5,051,077 - 5,163,035 (-)	NCBI

Sequence:

show sequence

CTGGTTACGCCAAGGGAAGCCCGGACTCTAGTCGCTGCTCCTACTCAGTCTCTCCGCCGGCTCC
CGGCCCCGCTGATCCCAGTTCTGTGGCCCGCGGTTCGCCGCCCCGCAAGCCGCCACGATGCCGG
TGTTTCATACACGCACGATTGAGAGCATTCTGGAGCCGGTGGCGCAGCAGATCTCGCACCTGGT
GATTATGCACGAGGAGGGCGAGGTGGACGGCAAAGCCATCCCTGACCTCACCGCGCCCGTGGCC
GCCGTGCAAGCGGCCGTCAGCAACCTCGTCCGGGTTGGAAAAGAGACTGTTCAAACTACCGAGG
ATCAGATATTGAAGAGAGATATGCCACCCGCATTTATTAAGGTTGAGAATGCTTGCACCAAGCT
TGTCCAAGCAGCCCAGATGCTTCAGTCCGACCCTTACTCAGTGCCTGCTCGAGATTATCTAATT
GATGGGTCAAGGGGCATCCTCTCTGGCACATCAGATCTACTCCTTACCTTCGATGAGGCTGAGG
TTCGTAAAATTATCCGAGTTTGCAAAGGAATTTTGGAATATCTTACAGTGGCAGAGGTCGTGGA
GACTATGGAAGATTTGGTCACTTATACAAAGAATCTTGGGCCAGGAATGACTAAGATGGCCAAG
ATGATTGATGAGAGACAGCAGGAGTTGACTCACCAGGAGCACCGAGTAATGTTGGTGAACTCAA
TGAACACTGTGAAAGAGTTGCTTCCAGTTCTCATTTCAGCTATGAAGATTTTTGTAACAACTAA
AAATTCAAAAAACCAAGGAATAGAAGAAGCTTTGAAAAATCGCAATTTTACTGTGGAAAAGATG
AGTGCTGAAATTAATGAGATCATCCGTGTATTACAACTCACTTCTTGGGATGAAGATGCCTGGG
CCAGCAAAGACACTGAAGCCATGAAGAGAGCATTGGCCTCCATAGACTCCAAACTGAATCAGGC
CAAAGGTTGGCTCCGTGACCCCAGTGCCTCCCCAGGGGATGCTGGTGAACAGGCCATCAGGCAG
ATCTTAGATGAAGCTGGAAAAGTTGGTGAACTTTGTGCAGGCAAGGAACGCAGGGAGATCCTGG
GAACCTGCAAAATGCTAGGGCAGATGACTGATCAAGTGGCTGACCTCCGAGCTAGAGGTCAAGG
AGCTTCACCAGTGGCCATGCAGAAAGCCCAGCAGGTATCTCAAGGTCTAGATGTGCTCACAGCA
AAGGTGGAGAATGCAGCTCGAAAGTTGGAAGCCATGACAAACTCAAAGCAGAGCATAGCAAAGA
AGATTGATGCTGCTCAGAATTGGCTTGCAGATCCAAATGGTGGACCTGAAGGAGAAGAACAGAT
CCGAGGGGCTTTGGCTGAAGCTCGGAAAATAGCAGAATTGTGTGATGATCCTAAAGAGAGAGAT
GACATTCTTCGTTCCCTTGGAGAAATATCTGCTCTGACTTCTAAATTAGCAGATTTACGAAGGC
AGGGGAAAGGAGATTCCCCAGAGGCTCGAGCATTGGCCAAACAGGTGGCCACGGCCCTTCAGAA
CCTGCAGACCAAAACCAACAGGGCTGTGGCAAACAGCAGACCTGCCAAAGCAGCTGTCCACCTT
GAGGGCAAAATTGAGCAAGCACAGCGATGGATTGATAATCCTACAGTGGATGACCGGGGAGTCG
GTCAGGCTGCTATCCGGGGGCTTGTGGCTGAAGGACATCGTCTGGCTAATGTCATGATGGGGCC
TTATCGTCAAGATCTTCTTGCCAAGTGTGACCGTGTGGACCAGTTGACAGCTCAGCTGGCTGAC
CTGGCTGCCAGAGGGGAAGGGGAAAGTCCTCAGGCCAGAGCACTTGCATCACAGCTCCAAGACT
CCTTAAAGGATCTGAAAGCCAGGATGCAGGAGGCTATGACTCAGGAGGTGTCAGATGTTTTCAG
TGATACCACAACTCCTATCAAGCTATTGGCAGTGGCGGCTACTGCCCCTCCTGATGCACCCAAT
AGGGAAGAGGTATTTGATGAGAGGGCAGCAAACTTTGAAAACCATTCAGGAAGGCTTGGAGCTA
CAGCAGAGAAGGCGGCTGCTGTTGGTACTGCTAATAAATCAACAGTGGAAGGCATTCAGGCATC
AGTGAAGACTGCTCGAGAACTCACACCCCAGGTCATCTCAGCTGCTCGCATCTTACTGAGGAAC
CCTGGAAATCAAGCCGCTTGTGAACATTTTGAAACCATGAAGAACCAGTGGATTGATAATGTTG
AAAAAATGACAGGGCTGGTGGACGAAGCCATTGATACCAAATCTCTGTTGGATGCTTCTGAAGA
AGCAATTAAAAAAGATCTGGACAAGTGTAAGGTAGCCATGGCCAACATTCAGCCTCAGATGCTG
GTTGCTGGGGCAACAAGCATTGCTCGTCGGGCCAACCGAATCCTGCTGGTGGCGAAGAGGGAGG
TGGAGAACTCTGAGGATCCCAAGTTCCGTGAGGCTGTGAAAGCTGCCTCTGATGAATTGAGCAA
AACAATCTCCCCTATGGTGATGGATGCAAAGGCTGTGGCTGGAAACATTTCTGACCCTGGCCTG
CAAAAGAGCTTCCTGGACTCTGGATATCGGATCCTGGGAGCTGTGGCCAAGGTCAGAGAAGCCT
TCCAACCTCAGGAACCTGACTTCCCACCTCCTCCACCTGACCTTGAACAGCTCCGACTAACAGA
TGAGCTTGCTCCTCCCAAACCACCTCTGCCTGAGGGTGAGGTCCCTCCACCCAGGCCCCCACCA
CCAGAGGAAAAGGATGAAGAGTTTCCTGAGCAGAAAGCCGGGGAGGTGATTAATCAGCCAATGA
TGATGGCTGCCAGGCAGCTCCATGATGAAGCTCGAAAATGGTCCAGCAAGGGCAATGATATCAT
TGCAGCAGCCAAGCGCATGGCTCTGCTGATGGCTGAGATGTCTCGGCTGGTAAGAGGGGGCAGT
GGTACCAAGCGGGCACTCATTCAGTGTGCCAAGGACATTGCCAAGGCCTCAGATGAAGTGACTC
GGTTGGCCAAGGAAGTTGCCAAGCAGTGCACAGATAAGCGGATTAGAACCAACCTCTTACAGGT
ATGTGAGCGAATCCCAACTATAAGCACCCAGCTCAAAATCCTGTCTACTGTAAAGGCCACCATG
CTGGGCCGGACCAACATCAGTGACGAGGAATCTGAGCAGGCCACAGAGATGCTAGTTCACAATG
CCCAGAACCTCATGCAGTCCGTGAAGGAGACTGTAAGAGAAGCAGAAGCTGCTTCAATCAAAAT
TCGAACAGATGCTGGATTTACACTGCGCTGGGTCAGAAAGACTCCCTGGTACCAGTAGGTACCC
AGCCAAACCTGGCTGGTACGGAAACCCCTACTGAAAAGAAGAATAATCCGAGTTCCAGAAGCCA
TCTGGAGTTGCTGGGGGTTGAAAGCTACATCCCAGCCTGACATATCAGAAAGGAATGGGGTCTC
TTCACATTACAAACCATTTATACTCTTTGTCATGGACACTTTGAAATATGTCTCCATATAAATT
CTGTATTCTCAAACACAGTTAAACTCATGTATACTCTGTCTCAATAGGTGGACTGGGTTTCTAG
CCCATGGACTTCACATAAGCTCAGAATTTAAGAGTGAAAACACTAGCCAGACACCCTAGGGGAC
ATTTCCCTCTTGTTTCCTTTACACCAGCCAGTCAGTTAAGAAAATCTCTCTGCTTCCAAAAAAT
TGTTTGGGCTTTCCATGTTGCTGCTGACCCCGCCTGCCCTGGGTTGTGCTACCTGGGTCCTTTT
CAGAAGTGAGCTTTGCTGCTGCAGGAAAAGGTAGCCTTTGGGAACCCCAACATATAGGCCTGGA
TTCATTTCCTGCCTCTCTCCAATTTAATTCAAGTTTCCACACACTAGCAAACTTCACTATCAGG
AGGAAATCACAGAATCATGATTCTGTCTTTATTATGCCTCTGAGCAATGTCTGTGCTAAGGAAA
CTTCTTGTCCCATGGCAGTCCTCAGCCTGCCAAGGTAACCATCCCATGAATACACTGTGTGCCC
TGGTGCTCTCTGTCACTAGAGGGGCAGAGTAGCCAGAGTGTGGCCCTGCCCATCTTCCCAAGGG
GGTCATGCCCAGGTGTTCCATGCTTTGTCACTGCCTGCAAAGTCTGTGCTGAGGACTTATCATT
CATTCTTAGCTCTTTATTGTTCTTTTTTAAGCTGAAATGCTGCATTTAATTTTTAACCAAATCA
TGTTCTGGCTTTTGTAGTCTTCCCCTAAACCCTTCCTAAATAAGATTTTTAAATATATGTAGGT
GTTCTTTCTTTTCTTTTTTGGGAAATTGGAGTCTCACTATGTTGCCAAGCCTGGTCTCAAACTC
CTGGGTTCAAGGGATACTACTGTCTTGACTTCTTGAATAGATGGGACTACAGGCATATGTCACT
ATACTTCGGTTTGTATGTAATTTCGAAAGATCCTTTTTATCCTTTTGAAATTCAGTTCATAAGA
ATTAGTACTAGACCTCTGAGATTGTCTAATGAAAAGGCAATCCTGTTAAAGGACACTTCTATCT
AAGGGAGAGTGGTATTTGCAGACTAGAATTTGAATGCTTCTGGGACTAAATCAATGGTAAATAC
TCCTGGAATTCCTACTTCCCTTCAACCAACTAAACCAAGCCCCTTTATACTCTCCTAAATATAA
TTGAAAATAATGAGCATAATATTTAATTATCACCATAGTAAATTTCCTATTATGCAAAGTTAAA
AGGCAATTTTTCCTCCCTTCCCCCCGACACTTATCACTGCTGCCGAAGCATTCTCCAGCACGTA
AACCATATTTCTTTCCCAACCCCAAATGAAAAAAGTAAAGGAGTGAGACCCTTTGTGTAAATAT
GCTTTCCTTTCACCCCCAATGTGTGTTAGATCCCACCATCAAATGTATAGCACTTGTCTTAAGG
TGGTCCTGCACACTCAGGCTACCTCTATTTCCTTTTAACTGATAAAAGATTATTTTAAGGCCCT
CAGCATATTTGTATAATTGCTTACCTGATATAAATGCAATATTAATGCCTTTAAAGTATGAATC
TATGCCAAAGATCACCTTTTGTTTTACTGAAGATTACTTAGAAGAAATAAGAAAAATCTCTGTT
CTTCAAGTTCTTCTGGTGTTGAGACACTGGTTTTACACTTTATGCCAGATGTGCTTTTCTCTAA
CAACAGTGCTCAAGACACAGTGAAGCAAACAAAACAAAACAAATCCCTGAATGGTGGAGGTGTC
ACCACTTAAAAAAAAAAAATACATTTGTAAGCTAGGATTTGTTATATGCAAATATTTTCTGCTT
CCTCTTTTTTCTGTTTAAAACAATAAAATGCATTTGTATAAATAATGCTCTAAAGTTGGATGTT
ATTTTAGTAAGAACTTTTAGGTCAAGTTTTTCCTTTATTTTTGAAGAATAGCCAATTAAACTAA
TCCTTAAGACCTGGAAACTAAAGATGTAGAAATCGACAATAGTATTTTAACTTAACAAGGATCT
GTGTGATAAAGGACAACTTTGGGGATTATATACTAGAAGTAGCAGTGACAAAGGTTAACAGAAG
GCAGAAAGCAGCCAGATGATATAGATCACCCACTGGTTGAAGAACTCTTTCTATTTAATAGGAA
TGACCATCACTATCCCTTAAAAAGCCGACGTTATTAAATGTGCAGAACCACAAATCCATTTTTT
TATATTCTAAAATTCAGCATAGGAAGGTTCTCAAGGACCTACCAGGGCTCTGGGGCAGAACAAG
CTTTTGGAGACATATGCCTCTTCTTAAGCCCCGACTAGATCAGTACTAGGAGATTTTTAAAAAA
TATTTTTAATTGTAGATGGACACAACATCTTTATTTTTTTAATATGGTACTGAGAATTGAACTC
AGTGCCTCACACATGCTAGGCAAGTGCTCTACCACTGAGCCACAATCTCAGCCCACACTAGGAG
ATTCTTGGACAGAGCTGGAACATAACAGTTTTTGCCTGATTTTTCTAGATCTGCAAAGGTTAAA
TATCATTAAAGGTTGAAATGTGGGCTGAGGCTGTAGCTCACTGATAGGCTGCTTGCCTAGCACG
TGTGATACACTGGGTTCGATCCTTGGTACCACATATAGAAATATAAAGTCATGCTGTCCATCTA
CAACTACTTTAAAAAAAAAAAAGTGATACTTAAAAGTGTTGCTAACTGCATTTATCACCTACCT
ACAAGAGCTTCCAACCATACAGGCAGATTCTAGCCTGCTTGAATTAAATAGAAATGTCCAAAGC
TATTAATTAGGGCAGCAATCTCTAACATTGCCCCATTTCTGCTATTTACCTTATGTTCACTGCT
GCATTGTAGTTAGTTTTCACAAATCAGTTGCCTCTAAGGACAATAAGATCAGCACATTCCAAGA
GTTCTTCTATAACACTATTTAAGGAATATACCTACCAGATGAATGCCCTCTGAATACAATGATG
GGGACTTCATCAAGCAGAAACTAAACATCTACTTTCATTTGCTCTTAGGATATACTCCTTTCAC
AACTTGGAAAAAGGGAATATTATAGGATTAGCTGGACCTCTGTGCTTAGTAAGTATTCTAATAT
TACTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005325950	(Get FASTA)	NCBI Sequence Viewer
	XP_005325951	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011537.3
	ENSSTOP00000028012.1
GenBank Protein	KAG3264657	(Get FASTA)	NCBI Sequence Viewer
	KAG3264658	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005325951 ⟸ XM_005325894
- Peptide Label:	isoform X2
- UniProtKB:	I3MJY7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQT TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDE AEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLV NSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDED AWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIRQILDEAGKVGELCAGKERRE ILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSI AKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAELCDDPKERDDILRSLGEISALTSKLADL RRQGKGDSPEARALAKQVATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDR GVGQAAIRGLVAEGHRLANVMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALASQL QDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGRL GATAEKAAAVGTANKSTVEGIQASVKTARELTPQVISAARILLRNPGNQAACEHFETMKNQWID NVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAK REVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVR EAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQ PMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDE VTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLV HNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ hide sequence

RefSeq Acc Id:	XP_005325950 ⟸ XM_005325893
- Peptide Label:	isoform X1
- UniProtKB:	A0A287D3A9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQT TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDE AEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLV NSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDED AWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIRQILDEAGKVGELCAGKERRE ILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSI AKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAELCDDPKERDDILRSLGEISALTSKLADL RRQGKGDSPEARALAKQVATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDR GVGQAAIRGLVAEGHRLANVMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALASQL QDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGRL GATAEKAAAVGTANKSTVEGIQASVKTARELTPQVISAARILLRNPGNQAACEHFETMKNQWID NVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAK REVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVR EAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQ PMMMAARQLHDEARKWSSKPGIPAAEVGIGVVAEADAVDAVGFSVPSDMEDDYEPELLLMPSNQ PVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAK ASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQAT EMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ hide sequence

Ensembl Acc Id:

ENSSTOP00000011537 ⟸ ENSSTOT00000012872

Ensembl Acc Id:

ENSSTOP00000028012 ⟸ ENSSTOT00000031279

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012867	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012872.3	UniProtKB/TrEMBL
	ENSSTOT00000031279.1	UniProtKB/TrEMBL
Gene3D-CATH	Alpha-catenin/vinculin-like	UniProtKB/TrEMBL
	Vinculin, Vh2 four-helix bundle	UniProtKB/TrEMBL
InterPro	Alpha-catenin/vinculin-like_sf	UniProtKB/TrEMBL
	Vinculin	UniProtKB/TrEMBL
	Vinculin/catenin	UniProtKB/TrEMBL
	Vinculin_CS	UniProtKB/TrEMBL
NCBI Gene	Vcl	ENTREZGENE
PANTHER	PTHR46180	UniProtKB/TrEMBL
Pfam	Vinculin	UniProtKB/TrEMBL
PRINTS	VINCULIN	UniProtKB/TrEMBL
PROSITE	VINCULIN_1	UniProtKB/TrEMBL
	VINCULIN_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47220	UniProtKB/TrEMBL
UniProt	A0A287D3A9	ENTREZGENE, UniProtKB/TrEMBL
	I3MJY7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)