Ca13 (carbonic anhydrase 13) - Rat Genome Database

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Gene: Ca13 (carbonic anhydrase 13) Ictidomys tridecemlineatus
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Symbol: Ca13
Name: carbonic anhydrase 13
RGD ID: 12546990
Description: ENCODES a protein that exhibits carbonate dehydratase activity (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); myelin sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,586,067 - 47,615,381 (-)NCBI
SpeTri2.0NW_004936544177,336 - 206,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Ca13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,586,067 - 47,615,381 (-)NCBI
SpeTri2.0NW_004936544177,336 - 206,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl885,220,587 - 85,284,073 (+)EnsemblGRCh38hg38GRCh38
GRCh38885,245,458 - 85,284,073 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37886,157,687 - 86,196,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,345,259 - 86,383,554 (+)NCBINCBI36hg18NCBI36
Build 34886,345,258 - 86,383,554NCBI
Celera882,162,764 - 82,201,350 (+)NCBI
Cytogenetic Map8q21.2NCBI
HuRef881,651,766 - 81,690,497 (+)NCBIHuRef
CHM1_1886,209,312 - 86,248,027 (+)NCBICHM1_1
Car13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,706,787 - 14,728,062 (+)NCBIGRCm39mm39
GRCm39 Ensembl314,706,787 - 14,728,062 (+)Ensembl
GRCm38314,641,727 - 14,663,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,641,727 - 14,663,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv37314,641,727 - 14,663,002 (+)NCBIGRCm37mm9NCBIm37
MGSCv36314,618,518 - 14,639,139 (+)NCBImm8
Celera314,649,523 - 14,670,798 (+)NCBICelera
Cytogenetic Map3A1NCBI
Ca13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2286,928,401 - 86,959,525 (-)NCBI
Rnor_6.0 Ensembl288,282,961 - 88,314,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0288,282,961 - 88,314,254 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02108,055,053 - 108,086,130 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4288,271,908 - 88,309,336 (-)NCBIRGSC3.4rn4RGSC3.4
Celera282,519,345 - 82,549,951 (-)NCBICelera
Cytogenetic Map2q23NCBI
Ca13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,194,501 - 3,219,755 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,194,961 - 3,219,019 (+)NCBIChiLan1.0ChiLan1.0
CA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1883,381,011 - 83,419,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl883,381,011 - 83,419,446 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0881,770,852 - 81,809,750 (+)NCBIMhudiblu_PPA_v0panPan3
CA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,784,614 - 31,833,429 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,782,680 - 31,850,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,067,124 - 32,112,791 (+)NCBI
ROS_Cfam_1.02931,932,517 - 31,980,427 (+)NCBI
UMICH_Zoey_3.12931,988,167 - 32,033,742 (+)NCBI
UNSW_CanFamBas_1.02932,006,949 - 32,052,786 (+)NCBI
UU_Cfam_GSD_1.02932,390,753 - 32,439,552 (+)NCBI
CA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,407,473 - 51,468,961 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,406,755 - 51,468,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,422,548 - 56,483,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CA13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,617,375 - 80,654,408 (+)NCBI
ChlSab1.1 Ensembl880,617,898 - 80,651,692 (+)Ensembl
Ca13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247446,418,487 - 6,447,023 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005328625   ⟹   XP_005328682
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530347,586,067 - 47,615,381 (-)NCBI
SpeTri2.0NW_004936544177,336 - 206,638 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328682 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005328682   ⟸   XM_005328625
- UniProtKB: I3MKU5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013348 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000011963 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013349 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
NCBI Gene Ca13 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt I3MKU5 ENTREZGENE, UniProtKB/TrEMBL