Gabbr1 (gamma-aminobutyric acid type B receptor subunit 1) - Rat Genome Database

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Gene: Gabbr1 (gamma-aminobutyric acid type B receptor subunit 1) Ictidomys tridecemlineatus
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Symbol: Gabbr1
Name: gamma-aminobutyric acid type B receptor subunit 1
RGD ID: 12546881
Description: ENCODES a protein that exhibits extracellular matrix protein binding (ortholog); G protein-coupled GABA receptor activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); negative regulation of adenylate cyclase activity (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); amphetamine abuse (ortholog); FOUND IN axolemma (ortholog); dendritic shaft (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-aminobutyric acid type B receptor subunit 1, transcript variant X1; gamma-aminobutyric acid type B receptor subunit 1, transcript variant X2; gamma-aminobutyric acid type B receptor subunit 1, transcript variant X3; gamma-aminobutyric acid type B receptor subunit 1, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,454,274 - 32,483,774 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367231,107,995 - 1,137,178 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367231,108,105 - 1,137,602 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gabbr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,454,274 - 32,483,774 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367231,107,995 - 1,137,178 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367231,108,105 - 1,137,602 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABBR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,602,238 - 29,633,183 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,555,629 - 29,633,976 (-)EnsemblGRCh38hg38GRCh38
GRCh37629,570,015 - 29,600,960 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,677,984 - 29,708,839 (-)NCBINCBI36Build 36hg18NCBI36
Build 34629,677,984 - 29,708,839NCBI
Celera631,176,094 - 31,207,052 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,377,091 - 29,408,050 (-)NCBIHuRef
CHM1_1629,572,149 - 29,603,041 (-)NCBICHM1_1
T2T-CHM13v2.0629,476,949 - 29,507,887 (-)NCBIT2T-CHM13v2.0
Gabbr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,356,888 - 37,385,197 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,356,858 - 37,385,959 (+)EnsemblGRCm39 Ensembl
GRCm381737,045,966 - 37,074,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,045,966 - 37,075,067 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,182,911 - 37,211,250 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,654,124 - 36,682,342 (+)NCBIMGSCv36mm8
Celera1740,469,514 - 40,497,873 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
Gabbr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,469,779 - 1,499,352 (-)NCBIGRCr8
mRatBN7.2201,464,534 - 1,494,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,464,534 - 1,493,994 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,517,886 - 1,547,375 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,521,372 - 1,550,860 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,462,860 - 1,492,324 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0201,955,344 - 1,984,907 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl201,955,359 - 1,984,863 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0203,996,333 - 4,025,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,553,297 - 1,582,426 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1201,554,603 - 1,577,774 (-)NCBI
Celera202,173,047 - 2,202,332 (-)NCBICelera
Cytogenetic Map20p12NCBI
Gabbr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495558385,255 - 115,189 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495558385,255 - 115,140 (-)NCBIChiLan1.0ChiLan1.0
GABBR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,209,980 - 44,252,225 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,173,327 - 40,215,570 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,405,026 - 29,437,108 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,065,119 - 30,095,663 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,065,119 - 30,095,304 (-)Ensemblpanpan1.1panPan2
GABBR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13526,212,274 - 26,243,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3526,213,076 - 26,237,572 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3526,026,852 - 26,036,580 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03526,519,961 - 26,546,313 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3526,519,961 - 26,547,127 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13526,175,827 - 26,201,883 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03526,235,461 - 26,261,547 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,705,638 - 27,731,798 (-)NCBIUU_Cfam_GSD_1.0
GABBR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,540,381 - 22,578,619 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,547,938 - 22,577,639 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2725,210,392 - 25,239,486 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GABBR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,985,816 - 43,017,278 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1742,986,513 - 43,014,577 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604429,132,753 - 29,162,814 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabbr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,425,055 - 25,455,656 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,425,208 - 25,452,600 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000002484   ⟹   ENSSTOP00000002222
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367231,108,179 - 1,134,478 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000036704   ⟹   ENSSTOP00000028892
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367231,108,064 - 1,137,178 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000037152   ⟹   ENSSTOP00000025398
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367231,107,995 - 1,134,625 (+)Ensembl
RefSeq Acc Id: XM_005338822   ⟹   XP_005338879
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494632,456,146 - 32,483,774 (-)NCBI
SpeTri2.0NW_0049367231,108,107 - 1,135,742 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013364549   ⟹   XP_013220003
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494632,454,274 - 32,483,774 (-)NCBI
SpeTri2.0NW_0049367231,108,105 - 1,137,602 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735604   ⟹   XP_021591279
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494632,456,146 - 32,483,774 (-)NCBI
SpeTri2.0NW_0049367231,108,113 - 1,135,742 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040282242   ⟹   XP_040138176
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494632,454,274 - 32,483,774 (-)NCBI
RefSeq Acc Id: XR_005732660
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494632,454,281 - 32,483,774 (-)NCBI
RefSeq Acc Id: XP_005338879   ⟸   XM_005338822
- Peptide Label: isoform X1
- UniProtKB: A0A287CVV3 (UniProtKB/TrEMBL),   A0A287D5M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220003   ⟸   XM_013364549
- Peptide Label: isoform X2
- UniProtKB: A0A287D5M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591279   ⟸   XM_021735604
- Peptide Label: isoform X3
- UniProtKB: A0A287D5M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040138176   ⟸   XM_040282242
- Peptide Label: isoform X4
- UniProtKB: A0A287D5M5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000002222   ⟸   ENSSTOT00000002484
RefSeq Acc Id: ENSSTOP00000028892   ⟸   ENSSTOT00000036704
RefSeq Acc Id: ENSSTOP00000025398   ⟸   ENSSTOT00000037152

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002478 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002484.3 UniProtKB/TrEMBL
  ENSSTOT00000036704.1 UniProtKB/TrEMBL
  ENSSTOT00000037152.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.2300 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR3_GABA-B UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_GABA_rcpt_B1 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
NCBI Gene Gabbr1 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID TYPE B RECEPTOR SUBUNIT 1 UniProtKB/TrEMBL
  PTHR10519 UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
PRINTS GABAB1RECPTR UniProtKB/TrEMBL
  GABABRECEPTR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A287CVV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D5M5 ENTREZGENE, UniProtKB/TrEMBL
  I3M0I2_ICTTR UniProtKB/TrEMBL