F8a1 (coagulation factor VIII associated 1) - Rat Genome Database

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Gene: F8a1 (coagulation factor VIII associated 1) Ictidomys tridecemlineatus
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Symbol: F8a1
Name: coagulation factor VIII associated 1
RGD ID: 12545040
Description: INVOLVED IN negative regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog); FOUND IN cytoplasm (inferred); early endosome (inferred); nuclear body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coagulation factor VIII-associated 1
RGD Orthologs
Human
Rat
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,875,412 - 119,878,722 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936927234,162 - 236,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
F8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,875,412 - 119,878,722 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936927234,162 - 236,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F8A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,886,355 - 154,888,061 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,886,355 - 154,888,061 (+)EnsemblGRCh38hg38GRCh38
GRCh37X154,114,630 - 154,116,336 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,767,829 - 153,769,530 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X154,250,279 - 154,251,980NCBI
CeleraX154,273,254 - 154,274,955 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,658,135 - 143,157,866 (+)NCBIHuRef
CHM1_1X154,027,043 - 154,027,955 (+)NCBICHM1_1
T2T-CHM13v2.0X153,122,763 - 153,124,469 (+)NCBIT2T-CHM13v2.0
F8a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,977,859 - 155,979,373 (+)NCBIGRCr8
mRatBN7.2X150,957,357 - 150,958,871 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,916,679 - 150,960,168 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,127,612 - 153,129,126 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X156,659,958 - 156,661,472 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,203,086 - 154,204,600 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01147,021,436 - 147,022,950 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1147,021,436 - 147,022,950 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01153,316,591 - 153,318,105 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,089,210 - 159,090,724 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1131,899,603 - 131,901,117 (+)NCBICelera
Cytogenetic MapXq37NCBI
F8A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,865,113 - 154,866,796 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,868,721 - 154,870,402 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X144,366,123 - 144,367,842 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
F8A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X125,280,978 - 125,282,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,200,367 - 143,202,144 (-)NCBISscrofa10.2Sscrofa10.2susScr3
F8A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X129,131,267 - 129,133,575 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606567,107,976 - 67,109,839 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005342004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005342004   ⟹   XP_005342061
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,875,412 - 119,878,722 (+)NCBI
SpeTri2.0NW_004936927234,162 - 236,881 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342061 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017150.2
GenBank Protein KAG3273276 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005342061   ⟸   XM_005342004
- UniProtKB: I3MYF4 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020699 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021198.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro F8A UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
NCBI Gene F8a1 ENTREZGENE
PANTHER 40-KDA HUNTINGTIN-ASSOCIATED PROTEIN UniProtKB/TrEMBL
  PTHR16797 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt I3MYF4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-16 F8a1  coagulation factor VIII associated 1    coagulation factor VIII-associated 1  Symbol and/or name change 5135510 APPROVED