Prdx4 (peroxiredoxin 4) - Rat Genome Database

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Gene: Prdx4 (peroxiredoxin 4) Ictidomys tridecemlineatus
Analyze
Symbol: Prdx4
Name: peroxiredoxin 4
RGD ID: 12544575
Description: ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN cell redox homeostasis (ortholog); extracellular matrix organization (ortholog); male gonad development (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); autistic disorder (ortholog); diffuse large B-cell lymphoma (ortholog); FOUND IN extracellular space (ortholog); smooth endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxiredoxin 4, transcript variant X1; peroxiredoxin 4, transcript variant X2; peroxiredoxin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X12,281,184 - 12,298,549 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936624859,276 - 873,860 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936624859,281 - 873,784 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Prdx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X12,281,184 - 12,298,549 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936624859,276 - 873,860 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936624859,281 - 873,784 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRDX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X23,667,493 - 23,686,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX23,664,262 - 23,686,397 (+)EnsemblGRCh38hg38GRCh38
GRCh37X23,685,610 - 23,704,514 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X23,595,566 - 23,614,435 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X23,445,301 - 23,464,171NCBI
CeleraX27,807,255 - 27,826,109 (+)NCBICelera
Cytogenetic MapXp22.11NCBI
HuRefX21,425,714 - 21,444,033 (+)NCBIHuRef
CHM1_1X23,716,633 - 23,735,478 (+)NCBICHM1_1
T2T-CHM13v2.0X23,251,060 - 23,269,952 (+)NCBIT2T-CHM13v2.0
Prdx4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X154,106,914 - 154,125,268 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX154,106,914 - 154,123,750 (-)EnsemblGRCm39 Ensembl
GRCm38X155,323,918 - 155,342,272 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX155,323,918 - 155,340,754 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X151,758,463 - 151,772,997 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X150,664,636 - 150,679,170 (-)NCBIMGSCv36mm8
CeleraX138,627,675 - 138,642,215 (-)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX72.38NCBI
Prdx4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X43,876,374 - 43,893,815 (+)NCBIGRCr8
mRatBN7.2X40,026,762 - 40,044,066 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX40,026,651 - 40,044,066 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX41,288,052 - 41,303,145 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X44,755,350 - 44,770,443 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X42,439,937 - 42,455,030 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X43,495,453 - 43,512,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX43,497,763 - 43,512,991 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X43,799,111 - 43,816,649 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X61,501,206 - 61,516,286 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X61,554,679 - 61,569,754 (+)NCBI
CeleraX40,657,785 - 40,672,868 (+)NCBICelera
Cytogenetic MapXq21NCBI
Prdx4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555094,116,379 - 4,132,529 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555094,111,501 - 4,132,529 (+)NCBIChiLan1.0ChiLan1.0
PRDX4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X25,468,141 - 25,487,149 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X25,471,572 - 25,490,540 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X16,266,501 - 16,285,458 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X23,641,701 - 23,660,267 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX23,641,701 - 23,660,267 (+)Ensemblpanpan1.1panPan2
PRDX4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X19,361,658 - 19,383,718 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX19,361,731 - 19,383,719 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X19,315,949 - 19,338,234 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX19,316,017 - 19,339,141 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X19,355,530 - 19,377,666 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X19,388,566 - 19,410,845 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X19,444,866 - 19,467,081 (+)NCBIUU_Cfam_GSD_1.0
PRDX4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX19,797,550 - 19,819,571 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X19,800,153 - 19,819,575 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X21,167,657 - 21,189,764 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRDX4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X22,113,405 - 22,136,307 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX22,116,605 - 22,136,308 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605624,012,393 - 24,032,362 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prdx4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462489795,521 - 112,920 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462489792,977 - 112,920 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000002021   ⟹   ENSSTOP00000001801
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936624859,276 - 873,860 (-)Ensembl
RefSeq Acc Id: XM_005334808   ⟹   XP_005334865
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X12,284,024 - 12,298,549 (+)NCBI
SpeTri2.0NW_004936624859,281 - 873,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013362630   ⟹   XP_013218084
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X12,284,024 - 12,298,549 (+)NCBI
SpeTri2.0NW_004936624859,303 - 873,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040269757   ⟹   XP_040125691
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X12,281,184 - 12,298,549 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005334865 (Get FASTA)   NCBI Sequence Viewer  
  XP_013218084 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125691 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001801.3
GenBank Protein KAG3271830 (Get FASTA)   NCBI Sequence Viewer  
  KAG3271831 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005334865   ⟸   XM_005334808
- Peptide Label: isoform X1
- UniProtKB: I3LZM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013218084   ⟸   XM_013362630
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040125691   ⟸   XM_040269757
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000001801   ⟸   ENSSTOT00000002021
Protein Domains
Thioredoxin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002028 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002021.3 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro AhpC/TSA UniProtKB/TrEMBL
  Peroxiredoxin_C UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
NCBI Gene Prdx4 ENTREZGENE
PANTHER PEROXIREDOXIN-4 UniProtKB/TrEMBL
  THIOREDOXIN PEROXIDASE UniProtKB/TrEMBL
Pfam 1-cysPrx_C UniProtKB/TrEMBL
  AhpC-TSA UniProtKB/TrEMBL
PROSITE THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt I3LZM6 ENTREZGENE, UniProtKB/TrEMBL