Samd15 (sterile alpha motif domain containing 15)

Gene: Samd15 (sterile alpha motif domain containing 15) Ictidomys tridecemlineatus

Analyze

Symbol:

Samd15

Name:

sterile alpha motif domain containing 15

RGD ID:

12544365

Description:

ASSOCIATED WITH genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 1C (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sterile alpha motif domain containing 15, transcript variant X1; sterile alpha motif domain containing 15, transcript variant X2; sterile alpha motif domain-containing protein 15

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	25,850,296 - 25,862,399 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	6,206,563 - 6,218,676 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	6,206,570 - 6,217,766 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hereditary sensory and autonomic neuropathy type 1C (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Samd15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	25,850,296 - 25,862,399 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	6,206,563 - 6,218,676 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	6,206,570 - 6,217,766 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SAMD15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	77,377,379 - 77,392,163 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	77,376,689 - 77,392,163 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	77,843,722 - 77,858,506 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	76,913,515 - 76,927,340 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	57,882,338 - 57,896,164 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	58,009,829 - 58,023,826 (+)	NCBI		HuRef
CHM1_1	14	77,783,197 - 77,797,022 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	71,586,754 - 71,601,542 (+)	NCBI		T2T-CHM13v2.0

Samd15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	87,247,240 - 87,260,315 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	87,246,497 - 87,260,315 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	87,194,484 - 87,213,541 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	87,199,723 - 87,213,541 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	88,541,290 - 88,554,323 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	88,089,443 - 88,102,476 (+)	NCBI		MGSCv36	mm8
Celera	12	88,664,925 - 88,677,955 (+)	NCBI		Celera
Cytogenetic Map	12	D2	NCBI
cM Map	12	41.4	NCBI

Samd15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	112,572,352 - 112,587,142 (+)	NCBI		GRCr8
mRatBN7.2	6	106,841,405 - 106,856,197 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	106,840,781 - 106,860,423 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	107,009,218 - 107,024,233 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	107,308,054 - 107,323,065 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	106,677,727 - 106,692,748 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	111,223,026 - 111,241,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	111,223,026 - 111,241,303 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	120,506,887 - 120,526,580 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	6	104,662,735 - 104,681,776 (+)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

Samd15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955438	1,273,054 - 1,283,424 (+)	NCBI	ChiLan1.0	ChiLan1.0

SAMD15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	78,460,994 - 78,494,894 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	77,677,498 - 77,711,398 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	57,930,369 - 58,007,893 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	77,131,795 - 77,145,765 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	77,131,795 - 77,145,765 (+)	Ensembl	panpan1.1		panPan2

SAMD15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	50,182,282 - 50,193,262 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	50,183,700 - 50,193,080 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	49,869,999 - 49,881,035 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	50,416,115 - 50,427,154 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	50,417,591 - 50,426,972 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	50,078,713 - 50,089,749 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	50,102,003 - 50,112,815 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	50,499,750 - 50,510,788 (+)	NCBI		UU_Cfam_GSD_1.0

SAMD15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	100,449,558 - 100,463,889 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	106,492,003 - 106,507,856 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SAMD15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	54,636,263 - 54,650,295 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	54,636,280 - 54,650,239 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	42,828,610 - 42,842,344 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Samd15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	24,518,215 - 24,526,110 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	24,517,134 - 24,526,203 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000020236 ⟹ ENSSTOP00000017239

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936488	6,206,563 - 6,218,676 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000034810 ⟹ ENSSTOP00000027769

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936488	6,206,563 - 6,218,676 (+)	Ensembl

RefSeq Acc Id:

XM_005321339 ⟹ XP_005321396

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	25,850,554 - 25,862,399 (-)	NCBI
SpeTri2.0	NW_004936488	6,206,570 - 6,217,766 (+)	NCBI

Sequence:

show sequence

CGCGACCGCGGAAAGAGCGCACCGGCCCCGATGCGGCCCCAGGAGTCTGGCCCGCGGAGGCTGG
CGACGCGGACGCGAGGAGAGCTACTGGTTGCCTTTGATCGCCAATTTTTAAAATCTGGGATCGG
CTAGAATCAACAAAACGTGAGGAAGATTCAGGAAGACACTGCCGGAAATCGTAGTATCCATAGA
GACGCTGTCGGAAGTTGAGGTTGCTAGGAGGCCTAGGCGCGTCCATTGAACTGCGTAATGGAGA
AAGTCCCAGAAGATTATGATTCTAGTCCTGATGAAAATGAGAAGCCAGAGCCTGAGAGGCCTGA
ACTTCGTAAATTGTCTGAAAATGCCGAACCAGACACCAAGACAGAGGCAGGCTACGAGCTATCC
CCAGAAAATGACCAAGTGCCACCGCCACTAGAAACTGAGAAAGAGGAAGAGTCAGAGATTGCAA
AGAATGTGCAGCCAAAACCAACCTGGACGTCTGAGGAAGAAATTCCTAAGGAGATCGAGGTAGA
GCCATCTAGCCAGACTGATTTAGGGATTCCCCAAGTGTTAAAGTCAGAGTCATTGAGAGAGATG
GGAGACGAACTTTACAAGGATTTGAAGACACCAGACCTAGAGCCACAAGAAGACGCTAAATCAA
ATGTTACAGAGGATGTACTCACAGAATCAGCTTCAGAAATAGATATTCAGTTACCAGCGGAAAC
CAAGTCTGAGGTTCTGGGGACCACAATCAATATGACAGGATTAGAGTTACTAAAGGAGTCTGAA
CAGGAAGTTTCAGAGGAATCACTTAGAGAGCAGAAGAAGGAAACAGATCTAGAACCTCCAGAGC
AGTCCAAACTAGATTTTTCAAATGAGAAACCAAAGAAATCAGTTGAAGAGACAGATCTACAGCC
AACAAAGATGACCAAACCAGAGATTCCAGAGGAGACACAAAGAAAGTCAACTGAGCAGACTAAA
CCAGAGTTTCCAGACCACAAATCAAGAAAGTCTACTGAGGAAGCAGATCTAAAACCTCCAGAAG
AGACTAAACTAGAGGTTCCAGAGGAGATGCAACAAATGTCAACTGAGGAGAAAGTTCCAGAGGG
ACTAGACGAGGTCAAATCTGAGCTTCCTGAGGAAGAATTAAGAAAAGCAAATAATGAAACAAAT
CTAAAGCCATCAGAAAAGACTACATCACAAGTTCCTAAGGAAACAAAAAGAAAGTCAACTGAGG
AAAAGATTCCAGAGACAGCAGAAGAGACTGGTCTAGTACTACAACATGAGGTCAAACCAAATGT
TCAAGAGGAGACACAAAAACAGTCAATTCGGGAAAAAGTTCTAGAACTATCAAAGAATACCAAA
CCAACAGATCATAAAGAGAAGCGGAGAAAATCAAGCAAGAATATAGGACTTGCTCCATCAGAGA
AGTCTGAATCATGGGAAACAGCAAGGGAGTCAACTGAGGAGAAAGGTCTAGAACCACCAGAGCA
GTCTAAATCAAAGTTTCCAAAGAAAGAACCAAGAAAATCAATTGAGGAAACAGGCCAAATGCCA
CCAAAGAAGACCAAACCTAAAGTTCAAGACAAGACACAAATGGAGCCAACAGAGGAGGAAAATC
TAAAGTTACCAGATGAAATCAAACCAAGAGAGAAACATACAGAATTATTCAAGGAAGAAGAGCC
AGCACCAATCAAATCTAAGTATTCTATGGATAAGGATCAGCTAGAATACCCCAAGTTTCAAACC
ATAAAAGTGTCAGTAGAAGAAACTGACACAACTTTTAAAAAAGACTATGCATCTAGACCTCTCA
CACAAAGTGAAATGGAATCAACTAGTACAAATTATGAGTATCTCTCAAAACTTCCAAAACTGCT
TCATCTTGTTGATATCTTAGACCTCCCAGAGACTCAGACAGGCTTAAGAAAGGCCTTTAGTCAA
AAGAAAATTACAGATTCAGGCCAAGAATCGAAAGAAACAGCACCTAAAGATAAAACATCCCAGC
CAAAAGAAAAGGAAACTGCATTACAATTCGAATATCTTAAATGGAGCCCAGAGAAAGTTGCAGA
ATGGATTAGCCAGCTAGGCTTCCCTCAATACAAGGAGTGTTTTACCACAAACTTCATTAGTGGC
CGAAAACTCATCCATGTAAATTGCTCAAACCTCCCTCAGATGGGGATAACAGATTTTGAGGACA
TGAAGGTGATTTCTCAGCACACACGAGAGCTACTGGGAATTGAAGAGCCATTATTTAGCCGCTC
CATCAGGCTTCCCCCTCGGGACAACATTGGCCTATTTTTAGAGCAAAAAGGTCATACTGGGGTA
AAATCTGACTCCTTGACCTTCTCTGAATTTGTCAAAACAAGAAGATTATGTGATTATGATCCAG
AAATAACTGCCTCTGAAGAGAATTAAGGCTGTTAACATTGTACGTAACTATAGAAGAAAGGTAT
TTCACTCACATTGAAAGATCAGACATAATTACTTAGGAGAAGAGGTGTGGCCTTTTTTATTTTT
CTTCTCTTCTTTTTCATTAAGGATCAGAGTCTGAACTGCTGGCTCCATTCCTAGGTCTTCTGTG
ATTCCCAGCACCTTCCCTTTATTTGTGTTTCAATTTAGCCCCTCCTTAAAACAAAGATAGCAAT
TCTTCTTGGATAATTGTAAGAATTCCTGATACATTCTAATAATACACCTGGGTATTAGGAACAT
GCTGGAGGAACTATAACTAAAAATAAAATCTGCCAGCCCAGATAATCCTTTCCATGAATGTAGA
AAAGAAGCCATTTTAGTACTGAATAAGCATAGGCAAGCTGTCAAAGATATTGCAAAGTCAAAAA
TAACTCACTCTTTAAGTCAACAAGACAGATTATAATCTATTACATGCATGTTAATTATCCATAT
CTAATGGAAAAATAAAAATTCTCATATCTTGATCACAAATAGGAAGTTACTACTTGGAGCCAGG
CCCCCAGGTTAACCTCCCACAGAGAAAGGAGATAGTTCACCACCGGTCTCAATACACAGACATT
TCAAAAAAGACGGCTCCAAGGCCTCCAAAAGAACTCTCCTGGAGTATAAAACTGGCAAGAGGGT
TATTTACCTTTTTAAAAGATTTACATATATCTTCAAAACAAAGGATTTGCAATCGTGTTTTCTA
AAGGAAATACCTTAGGAAAGATGATGGGGGAAGGTTTTCTTCCTATAGGCATCATAGAAAAAAA
AAAGTAAGGTTTGTTTTTTGTTTTTTTAGATTTGTATAAATTCTTCTAAAACAACATGACTTAC
AGAAGTACCACTGACTATGAACAGGGTTTGGGGTTTATTTCAAGGTTCTTATATGTGGGAACTT
CTAGATCTTTATAAAATGAAATTCAAGCTAGAATCCACTTATGACTAGACTTCTCAAAAGAAAT
TATTAAATAATTCTTGCCTGAATGATTCCTATTCCTTTCCAGTTTTTTTTATTAATTGCTCAAA
ACATTACAATGATCTTGACA

hide sequence

RefSeq Acc Id:

XM_021723812 ⟹ XP_021579487

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	25,850,554 - 25,862,399 (-)	NCBI
SpeTri2.0	NW_004936488	6,206,570 - 6,217,766 (+)	NCBI

Sequence:

show sequence

CGCGACCGCGGAAAGAGCGCACCGGCCCCGATGCGGCCCCAGGAGTCTGGCCCGCGGAGGCTGG
CGACGCGGACGCGAGGAGAGCTACTGGTTGCCTTTGATCGCCAATTTTTAAAATCTGGGATCGG
CTAGAATCAACAAAACGTGAGGAAGATTCAGGAAGACACTGCCGGAAATCGTAGTATCCATAGA
GACGCTGTCGGAAGTTGAGGTTGCTAGGAGGCCTAGGCGCGTCCATTGAACTGCGTAATGGAGA
AAGTCCCAGAAGATTATGATTCTAGTCCTGATGAAAATGAGAAGCCAGAGCCTGAGAGGCCTGA
ACTTCGTAAATTGTCTGAAAATGCCGAACCAGACACCAAGACAGAGGCAGGCTACGAGCTATCC
CCAGAAAATGACCAAGTGCCACCGCCACTAGAAACTGAGAAAGAGGAAGAGTCAGAGATTGCAA
AGAATGTGCAGCCAAAACCAACCTGGACGTCTGAGGAAGAAATTCCTAAGGAGATCGAGGTAGA
GCCATCTAGCCAGACTGATTTAGGGATTCCCCAAGTGTTAAAGTCAGAGTCATTGAGAGAGATG
GGAGACGAACTTTACAAGGATTTGAAGACACCAGACCTAGAGCCACAAGAAGACGCTAAATCAA
ATGTTACAGAGGATGTACTCACAGAATCAGCTTCAGAAATAGATATTCAGTTACCAGCGGAAAC
CAAGTCTGAGGTTCTGGGGACCACAATCAATATGACAGGATTAGAGTTACTAAAGGAGTCTGAA
CAGGAAGTTTCAGAGGAATCACTTAGAGAGCAGAAGAAGGAAACAGATCTAGAACCTCCAGAGC
AGTCCAAACTAGATTTTTCAAATGAGAAACCAAAGAAATCAGTTGAAGAGACAGATCTACAGCC
AACAAAGATGACCAAACCAGAGATTCCAGAGGAGACACAAAGAAAGTCAACTGAGCAGACTAAA
CCAGAGTTTCCAGACCACAAATCAAGAAAGTCTACTGAGGAAGCAGATCTAAAACCTCCAGAAG
AGACTAAACTAGAGGTTCCAGAGGAGATGCAACAAATGTCAACTGAGGAGAAAGTTCCAGAGGG
ACTAGACGAGGTCAAATCTGAGCTTCCTGAGGAAGAATTAAGAAAAGCAAATAATGAAACAAAT
CTAAAGCCATCAGAAAAGACTACATCACAAGTTCCTAAGGAAACAAAAAGAAAGTCAACTGAGG
AAAAGATTCCAGAGACAGCAGAAGAGACTGGTCTAGTACTACAACATGAGGTCAAACCAAATGT
TCAAGAGGAGACACAAAAACAGTCAATTCGGGAAAAAGTTCTAGAACTATCAAAGAATACCAAA
CCAACAGATCATAAAGAGAAGCGGAGAAAATCAAGCAAGAATATAGGACTTGCTCCATCAGAGA
AGTCTGAATCATGGGAAACAGCAAGGGAGTCAACTGAGGAGAAAGGTCTAGAACCACCAGAGCA
GTCTAAATCAAAGTTTCCAAAGAAAGAACCAAGAAAATCAATTGAGGAAACAGGCCAAATGCCA
CCAAAGAAGACCAAACCTAAAGTTCAAGACAAGACACAAATGGAGCCAACAGAGGAGGAAAATC
TAAAGTTACCAGATGAAATCAAACCAAGAGAGAAACATACAGAATTATTCAAGGAAGAAGAGCC
AGCACCAATCAAATCTAAGTATTCTATGGATAAGGATCAGCTAGAATACCCCAAGTTTCAAACC
ATAAAAGTGTCAGTAGAAGAAACTGACACAACTTTTAAAAAAGACTATGCATCTAGACCTCTCA
CACAAAGTGAAATGGAATCAACTAGTACAAATTATGAGTATCTCTCAAAACTTCCAAAACTGCT
TCATCTTGTTGATATCTTAGACCTCCCAGAGACTCAGACAGGCTTAAGAAAGGCCTTTAGTCAA
AAGAAAATTACAGATTCAGGCCAAGAATCGAAAGAAACAGCACCTAAAGATAAAACATCCCAGC
CAAAAGAAAAGGAAACTGCATTACAATTCGAATATCTTAAATGGAGCCCAGAGAAAGTTGCAGA
ATGGATTAGCCAGCTAGGCTTCCCTCAATACAAGGTGATTTCTCAGCACACACGAGAGCTACTG
GGAATTGAAGAGCCATTATTTAGCCGCTCCATCAGGCTTCCCCCTCGGGACAACATTGGCCTAT
TTTTAGAGCAAAAAGGTCATACTGGGGTAAAATCTGACTCCTTGACCTTCTCTGAATTTGTCAA
AACAAGAAGATTATGTGATTATGATCCAGAAATAACTGCCTCTGAAGAGAATTAAGGCTGTTAA
CATTGTACGTAACTATAGAAGAAAGGTATTTCACTCACATTGAAAGATCAGACATAATTACTTA
GGAGAAGAGGTGTGGCCTTTTTTATTTTTCTTCTCTTCTTTTTCATTAAGGATCAGAGTCTGAA
CTGCTGGCTCCATTCCTAGGTCTTCTGTGATTCCCAGCACCTTCCCTTTATTTGTGTTTCAATT
TAGCCCCTCCTTAAAACAAAGATAGCAATTCTTCTTGGATAATTGTAAGAATTCCTGATACATT
CTAATAATACACCTGGGTATTAGGAACATGCTGGAGGAACTATAACTAAAAATAAAATCTGCCA
GCCCAGATAATCCTTTCCATGAATGTAGAAAAGAAGCCATTTTAGTACTGAATAAGCATAGGCA
AGCTGTCAAAGATATTGCAAAGTCAAAAATAACTCACTCTTTAAGTCAACAAGACAGATTATAA
TCTATTACATGCATGTTAATTATCCATATCTAATGGAAAAATAAAAATTCTCATATCTTGATCA
CAAATAGGAAGTTACTACTTGGAGCCAGGCCCCCAGGTTAACCTCCCACAGAGAAAGGAGATAG
TTCACCACCGGTCTCAATACACAGACATTTCAAAAAAGACGGCTCCAAGGCCTCCAAAAGAACT
CTCCTGGAGTATAAAACTGGCAAGAGGGTTATTTACCTTTTTAAAAGATTTACATATATCTTCA
AAACAAAGGATTTGCAATCGTGTTTTCTAAAGGAAATACCTTAGGAAAGATGATGGGGGAAGGT
TTTCTTCCTATAGGCATCATAGAAAAAAAAAAGTAAGGTTTGTTTTTTGTTTTTTTAGATTTGT
ATAAATTCTTCTAAAACAACATGACTTACAGAAGTACCACTGACTATGAACAGGGTTTGGGGTT
TATTTCAAGGTTCTTATATGTGGGAACTTCTAGATCTTTATAAAATGAAATTCAAGCTAGAATC
CACTTATGACTAGACTTCTCAAAAGAAATTATTAAATAATTCTTGCCTGAATGATTCCTATTCC
TTTCCAGTTTTTTTTATTAATTGCTCAAAACATTACAATGATCTTGACA

hide sequence

RefSeq Acc Id:

XM_040276002 ⟹ XP_040131936

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	25,850,296 - 25,862,399 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005321396	(Get FASTA)	NCBI Sequence Viewer
	XP_021579487	(Get FASTA)	NCBI Sequence Viewer
	XP_040131936	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017239.2
	ENSSTOP00000027769.1
GenBank Protein	KAG3260618	(Get FASTA)	NCBI Sequence Viewer
	KAG3260619	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005321396 ⟸ XM_005321339
- Peptide Label:	isoform X1
- UniProtKB:	I3MYP3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKVPEDYDSSPDENEKPEPERPELRKLSENAEPDTKTEAGYELSPENDQVPPPLETEKEEESE IAKNVQPKPTWTSEEEIPKEIEVEPSSQTDLGIPQVLKSESLREMGDELYKDLKTPDLEPQEDA KSNVTEDVLTESASEIDIQLPAETKSEVLGTTINMTGLELLKESEQEVSEESLREQKKETDLEP PEQSKLDFSNEKPKKSVEETDLQPTKMTKPEIPEETQRKSTEQTKPEFPDHKSRKSTEEADLKP PEETKLEVPEEMQQMSTEEKVPEGLDEVKSELPEEELRKANNETNLKPSEKTTSQVPKETKRKS TEEKIPETAEETGLVLQHEVKPNVQEETQKQSIREKVLELSKNTKPTDHKEKRRKSSKNIGLAP SEKSESWETARESTEEKGLEPPEQSKSKFPKKEPRKSIEETGQMPPKKTKPKVQDKTQMEPTEE ENLKLPDEIKPREKHTELFKEEEPAPIKSKYSMDKDQLEYPKFQTIKVSVEETDTTFKKDYASR PLTQSEMESTSTNYEYLSKLPKLLHLVDILDLPETQTGLRKAFSQKKITDSGQESKETAPKDKT SQPKEKETALQFEYLKWSPEKVAEWISQLGFPQYKECFTTNFISGRKLIHVNCSNLPQMGITDF EDMKVISQHTRELLGIEEPLFSRSIRLPPRDNIGLFLEQKGHTGVKSDSLTFSEFVKTRRLCDY DPEITASEEN hide sequence

RefSeq Acc Id:	XP_021579487 ⟸ XM_021723812
- Peptide Label:	isoform X2
- UniProtKB:	A0A287D2L4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKVPEDYDSSPDENEKPEPERPELRKLSENAEPDTKTEAGYELSPENDQVPPPLETEKEEESE IAKNVQPKPTWTSEEEIPKEIEVEPSSQTDLGIPQVLKSESLREMGDELYKDLKTPDLEPQEDA KSNVTEDVLTESASEIDIQLPAETKSEVLGTTINMTGLELLKESEQEVSEESLREQKKETDLEP PEQSKLDFSNEKPKKSVEETDLQPTKMTKPEIPEETQRKSTEQTKPEFPDHKSRKSTEEADLKP PEETKLEVPEEMQQMSTEEKVPEGLDEVKSELPEEELRKANNETNLKPSEKTTSQVPKETKRKS TEEKIPETAEETGLVLQHEVKPNVQEETQKQSIREKVLELSKNTKPTDHKEKRRKSSKNIGLAP SEKSESWETARESTEEKGLEPPEQSKSKFPKKEPRKSIEETGQMPPKKTKPKVQDKTQMEPTEE ENLKLPDEIKPREKHTELFKEEEPAPIKSKYSMDKDQLEYPKFQTIKVSVEETDTTFKKDYASR PLTQSEMESTSTNYEYLSKLPKLLHLVDILDLPETQTGLRKAFSQKKITDSGQESKETAPKDKT SQPKEKETALQFEYLKWSPEKVAEWISQLGFPQYKVISQHTRELLGIEEPLFSRSIRLPPRDNI GLFLEQKGHTGVKSDSLTFSEFVKTRRLCDYDPEITASEEN hide sequence

RefSeq Acc Id:	XP_040131936 ⟸ XM_040276002
- Peptide Label:	isoform X1
- UniProtKB:	I3MYP3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000027769 ⟸ ENSSTOT00000034810

RefSeq Acc Id:

ENSSTOP00000017239 ⟸ ENSSTOT00000020236

Protein Domains

SAM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000028225	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000020236.2	UniProtKB/TrEMBL
	ENSSTOT00000034810.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.50	UniProtKB/TrEMBL
InterPro	SAM	UniProtKB/TrEMBL
	SAM/pointed_sf	UniProtKB/TrEMBL
NCBI Gene	Samd15	ENTREZGENE
PANTHER	PTHR46829	UniProtKB/TrEMBL
	STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15	UniProtKB/TrEMBL
Pfam	SAM_2	UniProtKB/TrEMBL
PROSITE	SAM_DOMAIN	UniProtKB/TrEMBL
SMART	SAM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47769	UniProtKB/TrEMBL
UniProt	A0A287D2L4	ENTREZGENE, UniProtKB/TrEMBL
	I3MYP3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar