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Gene: Slc12a5 (solute carrier family 12 member 5) Ictidomys tridecemlineatus

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Symbol:

Slc12a5

Name:

solute carrier family 12 member 5

RGD ID:

12544185

Description:

ENCODES a protein that exhibits ammonium channel activity (ortholog); potassium:chloride symporter activity (ortholog); protein kinase binding (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); chemical synaptic transmission (ortholog); chloride transport (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); developmental and epileptic encephalopathy 34 (ortholog); epilepsy (ortholog); FOUND IN dendrite membrane (ortholog); glutamatergic synapse (ortholog); perikaryon (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	191,546,150 - 191,573,184 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	6,998,044 - 7,026,767 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	6,999,793 - 7,027,094 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenosine deaminase deficiency (ISO)

developmental and epileptic encephalopathy 34 (ISO)

epilepsy (ISO)

focal epilepsy (ISO)

galactosialidosis (ISO)

Hyperalgesia (ISO)

idiopathic generalized epilepsy (ISO)

idiopathic generalized epilepsy 14 (ISO)

microcephaly (ISO)

movement disease (ISO)

status epilepticus (ISO)

temporal lobe epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ammonium transmembrane transport (ISO)

cell volume homeostasis (IEA)

chemical synaptic transmission (IEA,ISO)

chloride ion homeostasis (IEA)

chloride transmembrane transport (IEA)

chloride transport (IEA,ISO)

dendritic spine development (IEA)

hypotonic response (IEA)

intracellular chloride ion homeostasis (IEA)

intracellular pH reduction (ISO)

learning (IEA,ISO)

monoatomic ion transport (IEA)

multicellular organism growth (IEA,ISO)

postsynaptic neurotransmitter receptor diffusion trapping (ISO)

potassium ion homeostasis (IEA)

potassium ion import across plasma membrane (IEA)

potassium ion transmembrane transport (ISO)

potassium ion transport (IEA,ISO)

regulation of postsynapse assembly (ISO)

response to xenobiotic stimulus (IEA,ISO)

thermosensory behavior (IEA,ISO)

transmembrane transport (IEA)

Cellular Component

cell periphery (IEA)

dendrite membrane (ISO)

glutamatergic synapse (ISO)

membrane (IEA)

neuron projection (IEA)

neuronal cell body (IEA)

perikaryon (ISO)

plasma membrane (IEA)

postsynaptic specialization membrane (IEA,ISO)

synapse (IEA)

Molecular Function

ammonium channel activity (ISO)

chloride transmembrane transporter activity (IEA)

chloride:monoatomic cation symporter activity (IEA)

potassium:chloride symporter activity (IEA,ISO)

protein binding (ISO)

protein kinase binding (ISO)

symporter activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Slc12a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	191,546,150 - 191,573,184 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	6,998,044 - 7,026,767 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	6,999,793 - 7,027,094 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC12A5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	46,021,686 - 46,060,150 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	46,021,690 - 46,060,150 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	44,650,325 - 44,688,789 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	44,091,245 - 44,122,196 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	44,091,244 - 44,122,196	NCBI
Celera	20	41,361,790 - 41,400,248 (+)	NCBI		Celera
Cytogenetic Map	20	q13.12	NCBI
HuRef	20	41,391,623 - 41,430,078 (+)	NCBI		HuRef
CHM1_1	20	44,552,972 - 44,591,426 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	47,757,715 - 47,796,165 (+)	NCBI		T2T-CHM13v2.0

Slc12a5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	164,802,766 - 164,841,651 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	164,802,722 - 164,841,651 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	164,960,846 - 164,999,731 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	164,960,802 - 164,999,731 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	164,793,488 - 164,825,231 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	164,659,524 - 164,690,936 (+)	NCBI		MGSCv36	mm8
Celera	2	170,905,292 - 170,937,000 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	85.28	NCBI

Slc12a5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	174,115,833 - 174,155,112 (+)	NCBI		GRCr8
mRatBN7.2	3	153,696,517 - 153,735,801 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	153,696,517 - 153,735,765 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	157,505,210 - 157,544,609 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	166,004,181 - 166,043,578 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	163,747,957 - 163,787,354 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	161,433,303 - 161,465,078 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	161,425,988 - 161,462,879 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	167,617,776 - 167,649,551 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	156,006,017 - 156,037,915 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	155,912,052 - 155,943,951 (+)	NCBI
Celera	3	152,309,197 - 152,341,061 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

Slc12a5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	11,252,732 - 11,291,501 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	11,252,732 - 11,290,890 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC12A5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	51,761,634 - 51,800,013 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	51,754,742 - 51,793,119 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	42,359,005 - 42,397,412 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	43,445,193 - 43,483,132 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	43,445,182 - 43,483,132 (+)	Ensembl	panpan1.1		panPan2

SLC12A5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	33,285,773 - 33,322,885 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	33,285,852 - 33,321,567 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	32,812,617 - 32,849,088 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	33,996,109 - 34,032,786 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	33,996,183 - 34,031,468 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	33,254,354 - 33,290,810 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	33,369,649 - 33,406,360 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	33,908,853 - 33,945,337 (+)	NCBI		UU_Cfam_GSD_1.0

SLC12A5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	48,192,075 - 48,230,661 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	48,192,072 - 48,230,674 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	53,839,701 - 53,876,239 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC12A5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	17,823,141 - 17,854,996 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	17,825,676 - 17,854,950 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	66,458,116 - 66,497,517 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc12a5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	8,537,185 - 8,576,861 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624790	8,539,103 - 8,576,877 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021726313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000006434 ⟹ ENSSTOP00000005751

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936514	7,000,217 - 7,021,094 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000037888 ⟹ ENSSTOP00000029860

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936514	6,999,801 - 7,026,767 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000040708 ⟹ ENSSTOP00000024266

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936514	6,998,044 - 7,026,674 (-)	Ensembl

RefSeq Acc Id:

XM_021726313 ⟹ XP_021581988

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	191,546,150 - 191,573,184 (-)	NCBI
SpeTri2.0	NW_004936514	6,999,793 - 7,027,094 (-)	NCBI

Sequence:

show sequence

TCAGGGGAGGAGAGGGCCGGTCCCCGCCGCAACCCCTTTATCCCACCCGCTCACGCCCCCGTTT
TCCTGTAAGGGGGCCAACAGGCGCGCTCTGCCCGCCCCCCACGTCTCCTCTTCTCCCTCCCTCC
AGCTTCCCCCCCAAAAAACCCCGCCAGTGGCTCACGCCTCCTGCATACGGGATGAGGTGAGCAG
CGCCGCTGCTGAGAGGGGGCGCGCGCGGGTGTGAGCGTGTGTCCGTGTGCGAGTGTGTGTGCGC
CGGGCGGGCGGGCGGGCACTGCAGCTCCTTCCTCTGTGGAGCGGAGAGCGAGCGAGCGAGCGAG
CGAGCGAGAGAGCTAGAGCGAGCCAGAGAGCGGCGAAGGCGGGCAGAGGGGCGCGAGCGAAGCG
GCGCAGCCATCCCCGGCCCGGCGCCGCGCCGCCACCATGCTAAACAACCTGACGGACTGCGAGG
ACGGCGACGGGGGAGCCAACCCGGGTGATGGCAACCCCAAGGAAAGCAGCCCCTTCATCAACAG
CACCGACACGGAGAGGGGCAAGGAGTATGACGGCAAGAACATGGCCCTGTTTGAGCGGGCGGGT
GCTGGTGATGGGGGGCTCCAGACACTGACGCTGGCTTCCCTGCAGGCCCCGCGCATGGGCACCT
TTATGGGTGTGTACCTCCCGTGTCTGCAGAACATCTTTGGTGTCATCCTCTTCCTGAGACTCAC
TTGGGTGGTGGGCATAGCAGGCATCATGGAGTCCTTCTGCATGGTCTTCATCTGCTGCTCCTGT
ACGATGCTCACGGCCATCTCCATGAGTGCCATTGCCACCAATGGTGTTGTGCCTGCTGGTGGCT
CCTACTACATGATCTCCAGGTCTCTGGGCCCAGAGTTTGGGGGCGCCGTGGGCCTCTGCTTCTA
CCTCGGCACTACCTTTGCTGGGGCCATGTACATCCTGGGCACCATCGAGATCCTGCTGGCGTAC
CTCTTCCCGGCCATGGCCATCTTCAAGGCAGAGGATGCCAGTGGAGAGGCGGCGGCCATGCTGA
ACAACATGCGTGTCTACGGCACCTGCGTGCTCACCTGCATGGCCACTGTGGTGTTTGTGGGCGT
CAAGTATGTCAACAAGTTCGCCCTGGTCTTCCTGGGCTGTGTCATCCTGTCCATCCTGGCCATC
TATGCCGGGGTCATCAAGTCTGCCTTCGACCCACCCAACTTTCCGATCTGCCTCCTGGGGAACC
GCACGCTGTCGCGCCATGGCTTTGATGTCTGTGCCAAGCTGGCCTGGGAAGGAAATGAGACGGT
GACCACGCGGCTCTGGGGCCTGTTCTGCTCTTCACGTTTTCTCAACGCTACCTGCGATGAGTAC
TTCACCCGAAACAACGTCACAGAGATCCAGGGCATCCCTGGCGCTGCCAGCGGCCTCATCAAAG
AGAACCTGTGGAGCTCCTACCTCACCAAGGGGGTGATTGTGGAGAAGCGTGGGATGCCCTCGGT
GGGCCTGGCGGAGGGCACTGCTGTCGACATGGACCACCCGTACGTCTTCAGTGATATGACCTCC
TACTTCACCCTGCTGGTCGGCATCTACTTCCCGTCAGTCACAGGGATCATGGCGGGCTCCAACC
GCTCTGGGGACCTCCGGGATGCCCAGAAGTCCATCCCCACGGGCACCATCCTGGCCATCGCCAC
CACCTCTGCGGTCTACATCAGCTCCGTCGTCCTGTTTGGGGCCTGCATCGAGGGGGTCGTCCTG
CGGGACAAGTTTGGTGAAGCTGTGAATGGAAACCTGGTGGTGGGCACACTGGCCTGGCCATCTC
CCTGGGTCATTGTCATCGGCTCCTTCTTCTCCACCTGTGGGGCTGGGCTTCAGAGCCTCACTGG
GGCCCCACGCCTGTTACAGGCCATCTCCCGGGATGGCATAGTGCCCTTCCTGCAGGTCTTTGGC
CATGGCAAAGCCAACGGAGAGCCGACGTGGGCACTGCTGCTGACGGCCTGCATCTGCGAGATCG
GCATCCTCATTGCCTCCCTCGACGAGGTGGCCCCCATCCTGTCCATGTTCTTCCTGATGTGCTA
CATGTTCGTGAACCTGGCCTGTGCCGTGCAGACGCTGCTGAGGACGCCCAACTGGAGGCCGCGC
TTTCGATACTACCACTGGACCCTCTCCTTCCTGGGCATGAGCCTCTGCCTGGCCCTCATGTTCA
TCTGCTCCTGGTATTACGCACTGGTGGCCATGCTCATTGCGGGGCTCATCTACAAGTACATCGA
GTACCGCGGGGCAGAGAAGGAATGGGGCGATGGGATCCGGGGCCTGTCTCTCAGCGCCGCTCGC
TATGCCCTCTTGCGCCTGGAGGAAGGGCCCCCGCACACCAAGAACTGGAGGCCTCAGCTGCTGG
TGCTGGTGCGCGTGGACCAGGACCAGAACGTGGTGCACCCCCAGCTGCTCTCCCTGACCTCTCA
GCTCAAGGCGGGGAAGGGCCTGACCATCGTGGGCTCGGTCCTCGAGGGCACCTTTCTGGACAAC
CACCCCCAGGCCCAGCGGGCAGAGGAGTCTATCCGGCGCCTGATGGAGGCAGAGAAGGTGAAAG
GCTTCTGCCAGGTGGTGATCTCCTCCAACCTGCGCGACGGCGTGTCCCACCTGATTCAGTCCGG
GGGCCTCGGGGGCCTGCAGCACAACACGGTGCTCGTGGGCTGGCCCCGCAACTGGAGGCAGAAG
GAGGACCATCAGACGTGGCGGAACTTCATCGAACTGGTCCGGGAAACCACAGCTGGCCACCTGG
CCCTGCTGGTCACCAAGAACGTGTCCATGTTCCCTGGGAACCCCGAGCGCTTCTCCGAGGGCAG
CATCGACGTCTGGTGGATCGTGCACGACGGCGGCATGCTCATGCTGCTGCCCTTCCTGCTGCGC
CACCACAAGGTCTGGCGGAAGTGCAAGATGCGAATCTTCACTGTGGCCCAGATGGACGACAACA
GCATCCAGATGAAGAAGGACCTGACCACGTTTCTGTACCATTTGCGCATCACCGCGGAGGTGGA
GGTGGTGGAGATGCACGAGAGCGACATCTCCGCCTACACCTACGAGAAGACCCTGGTGATGGAG
CAGCGCTCCCAGATCCTCAAGCAGATGCACCTGACCAAGAACGAGCGCGAGCGGGAGATTCAGA
GTATCACAGATGAGTCTCGAGGCTCCATCCGGAGAAAGAATCCGGCCAACACTCGGCTTCGCCT
CAATGTCCCGGAAGAGACGGCTGGTGACAGCGAGGAGAAGCCCGAGGAGGAGGTGCAGCTGATC
CACGACCAGAGTGCTCCCAGCTGCCCCAGCAGCTCCCCGTCCCCAGGGGAGGAGCCTGAGGGGG
AGGGCGAGACAGATCCCGAGAAGGTGCATCTCACCTGGACCAAGGACAAGTCCGTGGCAGAGAA
GAATAAGGGCCCCAGTCCCGTCTCCTCGGAGGGCATCAAGGACTTCTTCAGCATGAAGCCGGAG
TGGGAGAACTTGAACCAGTCCAACGTGCGGCGCATGCACACGGCCGTGCGGCTGAACGAGGTCA
TCGTCAAGAAATCCCGGGACGCCAAGCTCGTTTTGCTCAACATGCCCGGGCCCCCCCGCAACCG
CAACGGTGACGAAAACTACATGGAGTTCCTCGAGGTCCTCACAGAACACCTGGATCGGGTGATG
CTGGTCCGCGGCGGCGGCCGCGAGGTCATCACCATCTACTCCTGAGGGCCAGGACCTGCCACCC
GGGCCCCAGCGCGCCCGGCCGCGGCCCCGGAGCCCTCGCCGCGCCCCCCGCCGCTGTCACCGTT
TACACACAGACCCTGTGCCCGTGCCCTGCCCCCTTTCCCCGCTGCCTGAAGCCTGGAGGCCACG
CCCGTCGGGGCTGACTCGGAGAGGGCGCCCGAGCGCCTGTCGTCCCGGCTGCGCTGCCCTTTTC
TAAGCGCGGCCTCGCCCGGCCGGAGAGACGCTGCAATAAGGGTCGGGAGCAGGTGCGGAAAGCA
GAGGACCTGGGGCCCGGAGGACCCCCGGCATCCTCGCGGCCCCTTCCCCTTCCCACGCCGCCGC
GGTCCTGGCGCTGCGCTCCTCGGCGCTGCGGCTCGCTCCCAGCGGCCCCGAGGCGCGGCTGGGC
AGGCGGCGCCCCAAGTCCCCC

hide sequence

Protein Sequences


Protein RefSeqs	XP_021581988	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000005751.3
	ENSSTOP00000024266.1
	ENSSTOP00000029860.1
GenBank Protein	KAG3263526	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021581988 ⟸ XM_021726313

- UniProtKB:

A0A287D8H9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLNNLTDCEDGDGGANPGDGNPKESSPFINSTDTERGKEYDGKNMALFERAGAGDGGLQTLTLA
SLQAPRMGTFMGVYLPCLQNIFGVILFLRLTWVVGIAGIMESFCMVFICCSCTMLTAISMSAIA
TNGVVPAGGSYYMISRSLGPEFGGAVGLCFYLGTTFAGAMYILGTIEILLAYLFPAMAIFKAED
ASGEAAAMLNNMRVYGTCVLTCMATVVFVGVKYVNKFALVFLGCVILSILAIYAGVIKSAFDPP
NFPICLLGNRTLSRHGFDVCAKLAWEGNETVTTRLWGLFCSSRFLNATCDEYFTRNNVTEIQGI
PGAASGLIKENLWSSYLTKGVIVEKRGMPSVGLAEGTAVDMDHPYVFSDMTSYFTLLVGIYFPS
VTGIMAGSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVLFGACIEGVVLRDKFGEAVNGNL
VVGTLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDGIVPFLQVFGHGKANGEPTWAL
LLTACICEIGILIASLDEVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLG
MSLCLALMFICSWYYALVAMLIAGLIYKYIEYRGAEKEWGDGIRGLSLSAARYALLRLEEGPPH
TKNWRPQLLVLVRVDQDQNVVHPQLLSLTSQLKAGKGLTIVGSVLEGTFLDNHPQAQRAEESIR
RLMEAEKVKGFCQVVISSNLRDGVSHLIQSGGLGGLQHNTVLVGWPRNWRQKEDHQTWRNFIEL
VRETTAGHLALLVTKNVSMFPGNPERFSEGSIDVWWIVHDGGMLMLLPFLLRHHKVWRKCKMRI
FTVAQMDDNSIQMKKDLTTFLYHLRITAEVEVVEMHESDISAYTYEKTLVMEQRSQILKQMHLT
KNEREREIQSITDESRGSIRRKNPANTRLRLNVPEETAGDSEEKPEEEVQLIHDQSAPSCPSSS
PSPGEEPEGEGETDPEKVHLTWTKDKSVAEKNKGPSPVSSEGIKDFFSMKPEWENLNQSNVRRM
HTAVRLNEVIVKKSRDAKLVLLNMPGPPRNRNGDENYMEFLEVLTEHLDRVMLVRGGGREVITI
YS

hide sequence

Ensembl Acc Id:

ENSSTOP00000005751 ⟸ ENSSTOT00000006434

Ensembl Acc Id:

ENSSTOP00000024266 ⟸ ENSSTOT00000040708

Ensembl Acc Id:

ENSSTOP00000029860 ⟸ ENSSTOT00000037888

Protein Domains

Amino acid permease/ SLC12A SLC12A transporter C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000006405	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000006434.3	UniProtKB/TrEMBL
	ENSSTOT00000037888.1	UniProtKB/TrEMBL
	ENSSTOT00000040708.1	UniProtKB/TrEMBL
Gene3D-CATH	Amino acid/polyamine transporter I	UniProtKB/TrEMBL
InterPro	AA-permease/SLC12A_dom	UniProtKB/TrEMBL
	KCL_cotranspt	UniProtKB/TrEMBL
	SLC12_C	UniProtKB/TrEMBL
	SLC12A_fam	UniProtKB/TrEMBL
NCBI Gene	Slc12a5	ENTREZGENE
PANTHER	PTHR11827	UniProtKB/TrEMBL
	PTHR11827:SF54	UniProtKB/TrEMBL
Pfam	AA_permease	UniProtKB/TrEMBL
	SLC12	UniProtKB/TrEMBL
PRINTS	KCLTRNSPORT	UniProtKB/TrEMBL
UniProt	A0A287CSJ9_ICTTR	UniProtKB/TrEMBL
	A0A287D8H9	ENTREZGENE, UniProtKB/TrEMBL
	I3M7X0_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM