Niban3 (niban apoptosis regulator 3) - Rat Genome Database

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Gene: Niban3 (niban apoptosis regulator 3) Ictidomys tridecemlineatus
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Symbol: Niban3
Name: niban apoptosis regulator 3
RGD ID: 12543832
Description: ASSOCIATED WITH Brain Small Vessel Disease 3 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Fam129c; family with sequence similarity 129 member C; LOW QUALITY PROTEIN: protein Niban 3; niban-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,847,538 - 203,862,825 (-)NCBI
SpeTri2.0NW_0049365963,399,045 - 3,411,431 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Niban3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,847,538 - 203,862,825 (-)NCBI
SpeTri2.0NW_0049365963,399,045 - 3,411,431 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIBAN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,523,301 - 17,553,839 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,523,301 - 17,556,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,634,110 - 17,664,652 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,495,110 - 17,525,648 (+)NCBINCBI36hg18NCBI36
Celera1917,535,726 - 17,566,244 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,199,190 - 17,229,612 (+)NCBIHuRef
CHM1_11917,633,492 - 17,663,983 (+)NCBICHM1_1
Niban3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,049,000 - 72,061,599 (+)NCBIGRCm39mm39
GRCm39 Ensembl872,050,292 - 72,060,580 (+)Ensembl
GRCm38871,596,356 - 71,608,146 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,597,648 - 71,607,936 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,121,545 - 74,132,048 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,121,545 - 74,132,048 (+)NCBImm8
Celera874,111,955 - 74,122,457 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
Niban3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21618,307,122 - 18,318,589 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1620,027,348 - 20,038,716 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01620,027,100 - 20,038,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01619,887,694 - 19,899,608 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,798,145 - 18,809,570 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1618,511,127 - 18,522,499 (+)NCBICelera
Cytogenetic Map16p14NCBI
Niban3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524784,974 - 795,068 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524786,504 - 795,307 (-)NCBIChiLan1.0ChiLan1.0
NIBAN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11917,983,448 - 18,011,710 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,983,448 - 18,011,699 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,013,689 - 17,040,984 (+)NCBIMhudiblu_PPA_v0panPan3
NIBAN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,274,346 - 45,290,852 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,077,609 - 45,290,775 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,188,325 - 45,204,537 (-)NCBI
ROS_Cfam_1.02045,761,302 - 45,777,530 (-)NCBI
UMICH_Zoey_3.12044,997,849 - 45,014,033 (-)NCBI
UNSW_CanFamBas_1.02045,407,903 - 45,424,112 (-)NCBI
UU_Cfam_GSD_1.02045,683,934 - 45,700,156 (-)NCBI
NIBAN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,138,303 - 60,197,611 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,164,259 - 60,185,772 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,728,234 - 59,750,902 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NIBAN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,014,646 - 16,039,086 (+)NCBI
Vero_WHO_p1.0NW_0236660743,385,070 - 3,410,823 (-)NCBI
Niban3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908511,115 - 522,509 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021731512   ⟹   XP_021587187
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365963,399,045 - 3,411,431 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040290974   ⟹   XP_040146908
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118203,847,538 - 203,862,825 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040146908 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3279958 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021587187   ⟸   XM_021731512
- Sequence:
RefSeq Acc Id: XP_040146908   ⟸   XM_040290974
Protein Domains
PH


Additional Information

Database Acc Id Source(s)
NCBI Gene Fam129c ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-23 Niban3  niban apoptosis regulator 3  Fam129c  family with sequence similarity 129 member C  Symbol and/or name change 5135510 APPROVED