Slc35f2 (solute carrier family 35 member F2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc35f2 (solute carrier family 35 member F2) Ictidomys tridecemlineatus
Analyze
Symbol: Slc35f2
Name: solute carrier family 35 member F2
RGD ID: 12543710
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); INVOLVED IN transmembrane transport (inferred); ASSOCIATED WITH ataxia telangiectasia (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494790,644,138 - 90,675,405 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936551830,055 - 891,883 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936551861,104 - 892,036 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Slc35f2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494790,644,138 - 90,675,405 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936551830,055 - 891,883 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936551861,104 - 892,036 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35F2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811107,790,991 - 107,858,787 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11107,790,991 - 107,928,293 (-)EnsemblGRCh38hg38GRCh38
GRCh3711107,661,717 - 107,729,513 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,166,927 - 107,234,864 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411107,166,927 - 107,234,864NCBI
Celera11104,816,599 - 104,884,333 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11103,587,143 - 103,655,308 (-)NCBIHuRef
CHM1_111107,545,043 - 107,613,193 (-)NCBICHM1_1
T2T-CHM13v2.011107,798,144 - 107,865,917 (-)NCBIT2T-CHM13v2.0
Slc35f2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,678,733 - 53,725,445 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,678,822 - 53,725,438 (+)EnsemblGRCm39 Ensembl
GRCm38953,771,433 - 53,818,161 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,771,538 - 53,818,154 (+)EnsemblGRCm38mm10GRCm38
MGSCv37953,619,342 - 53,665,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36953,569,675 - 53,616,293 (+)NCBIMGSCv36mm8
Celera951,024,617 - 51,071,508 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
Slc35f2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8863,055,503 - 63,099,791 (+)NCBIGRCr8
mRatBN7.2854,159,970 - 54,203,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl854,159,970 - 54,203,612 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx859,685,417 - 59,729,310 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,964,439 - 58,008,343 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,828,692 - 55,872,587 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0858,347,474 - 58,391,462 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,347,736 - 58,391,599 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0856,929,020 - 56,972,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4857,230,412 - 57,274,424 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1857,249,713 - 57,292,248 (+)NCBI
Celera853,651,055 - 53,694,600 (+)NCBICelera
Cytogenetic Map8q24NCBI
Slc35f2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,110,692 - 10,156,575 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541210,111,134 - 10,156,575 (-)NCBIChiLan1.0ChiLan1.0
SLC35F2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29108,539,837 - 108,610,523 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111109,633,674 - 109,704,413 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011102,681,791 - 102,750,821 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111106,159,625 - 106,227,656 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11106,159,625 - 106,227,656 (-)Ensemblpanpan1.1panPan2
SLC35F2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,608,190 - 24,658,859 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,607,815 - 24,658,053 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha524,527,364 - 24,577,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0524,630,962 - 24,681,183 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,630,930 - 24,681,141 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,684,989 - 24,734,308 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,579,736 - 24,628,928 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,638,557 - 24,688,833 (+)NCBIUU_Cfam_GSD_1.0
SLC35F2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,288,558 - 36,341,284 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1936,243,059 - 36,341,361 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,359,802 - 40,417,733 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35F2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,226,602 - 99,292,093 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl199,224,798 - 99,291,899 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604326,662,304 - 26,725,644 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35f2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247842,550,937 - 2,606,249 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247842,551,595 - 2,605,556 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000011318   ⟹   ENSSTOP00000010155
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936551830,055 - 891,883 (+)Ensembl
RefSeq Acc Id: XM_040283764   ⟹   XP_040139698
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494790,644,138 - 90,675,405 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040139698 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010155.3
Reference Protein Sequences
RefSeq Acc Id: XP_040139698   ⟸   XM_040283764
RefSeq Acc Id: ENSSTOP00000010155   ⟸   ENSSTOT00000011318


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011321 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011318.3 UniProtKB/TrEMBL
InterPro SLC35_F1/F2/F6 UniProtKB/TrEMBL
NCBI Gene Slc35f2 ENTREZGENE
PANTHER DUF914-RELATED UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35 MEMBER F2 UniProtKB/TrEMBL
Pfam SLC35F UniProtKB/TrEMBL
UniProt I3MH34_ICTTR UniProtKB/TrEMBL