Plpp3 (phospholipid phosphatase 3) - Rat Genome Database

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Gene: Plpp3 (phospholipid phosphatase 3) Ictidomys tridecemlineatus
Analyze
Symbol: Plpp3
Name: phospholipid phosphatase 3
RGD ID: 12543510
Description: ENCODES a protein that exhibits ceramide-1-phosphate phosphatase activity (inferred); integrin binding (inferred); lipid phosphatase activity (inferred); INVOLVED IN Bergmann glial cell differentiation (ortholog); blood vessel development (ortholog); cell adhesion (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); coronary artery disease (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipid phosphate phosphohydrolase 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505870,341,999 - 70,423,866 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365224,992,322 - 5,074,313 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365224,992,333 - 5,074,295 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Plpp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505870,341,999 - 70,423,866 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365224,992,322 - 5,074,313 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365224,992,333 - 5,074,295 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLPP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38156,494,761 - 56,579,563 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl156,494,761 - 56,645,301 (-)EnsemblGRCh38hg38GRCh38
GRCh37156,960,433 - 57,045,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36156,733,021 - 56,817,845 (-)NCBINCBI36Build 36hg18NCBI36
Celera155,245,253 - 55,330,133 (-)NCBICelera
Cytogenetic Map1p32.2NCBI
HuRef155,072,892 - 55,157,775 (-)NCBIHuRef
CHM1_1157,072,622 - 57,160,617 (-)NCBICHM1_1
T2T-CHM13v2.0156,373,591 - 56,458,441 (-)NCBIT2T-CHM13v2.0
Plpp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394105,014,544 - 105,089,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4105,014,544 - 105,089,961 (+)EnsemblGRCm39 Ensembl
GRCm384105,157,347 - 105,232,767 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4105,157,347 - 105,232,764 (+)EnsemblGRCm38mm10GRCm38
MGSCv374104,829,952 - 104,905,372 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364104,655,279 - 104,730,699 (+)NCBIMGSCv36mm8
Celera4103,508,199 - 103,583,768 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map449.18NCBI
Plpp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85125,156,000 - 125,231,119 (+)NCBIGRCr8
mRatBN7.25119,927,085 - 120,002,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5119,927,085 - 120,002,205 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5122,548,651 - 122,624,021 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05124,271,713 - 124,347,083 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05124,322,955 - 124,398,328 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05124,690,214 - 124,765,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5124,690,214 - 124,765,498 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05128,551,196 - 128,626,138 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45126,121,416 - 126,197,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15126,126,641 - 126,202,324 (+)NCBI
Celera5118,477,102 - 118,551,973 (+)NCBICelera
Cytogenetic Map5q34NCBI
Plpp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554643,081,334 - 3,197,413 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554643,122,420 - 3,197,359 (+)NCBIChiLan1.0ChiLan1.0
PLPP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21170,181,721 - 170,332,442 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,400,091 - 169,484,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0155,779,343 - 55,862,717 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1157,489,178 - 57,573,307 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl157,489,178 - 57,573,398 (-)Ensemblpanpan1.1panPan2
PLPP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1552,924,443 - 53,006,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl552,923,833 - 53,005,493 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha552,992,430 - 53,074,349 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0553,112,365 - 53,194,538 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl553,112,379 - 53,194,536 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1553,055,985 - 53,137,860 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0553,001,878 - 53,083,760 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0553,386,869 - 53,468,888 (+)NCBIUU_Cfam_GSD_1.0
PLPP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6155,800,678 - 155,894,912 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16155,800,838 - 155,894,919 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26143,642,088 - 143,734,081 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLPP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12076,382,041 - 76,466,497 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2076,382,079 - 76,477,847 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603340,825,335 - 40,909,946 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plpp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248623,550,968 - 3,627,058 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248623,550,498 - 3,627,061 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000024183   ⟹   ENSSTOP00000022012
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365224,992,322 - 5,074,313 (+)Ensembl
RefSeq Acc Id: XM_005326024   ⟹   XP_005326081
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505870,341,999 - 70,423,866 (-)NCBI
SpeTri2.0NW_0049365224,992,333 - 5,074,295 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326081 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022012.2
GenBank Protein KAG3283256 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005326081   ⟸   XM_005326024
- UniProtKB: I3NCB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000022012   ⟸   ENSSTOT00000024183
Protein Domains
Phosphatidic acid phosphatase type 2/haloperoxidase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027611 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024183.2 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidic acid phosphatase type 2/haloperoxidase UniProtKB/TrEMBL
InterPro P_Acid_Pase_2/haloperoxi_sf UniProtKB/TrEMBL
  P_Acid_Pase_2/haloperoxidase UniProtKB/TrEMBL
  PLPP UniProtKB/TrEMBL
NCBI Gene Plpp3 ENTREZGENE
PANTHER PTHR10165 UniProtKB/TrEMBL
  PTHR10165:SF79 UniProtKB/TrEMBL
Pfam PAP2 UniProtKB/TrEMBL
SMART acidPPc UniProtKB/TrEMBL
Superfamily-SCOP SSF48317 UniProtKB/TrEMBL
UniProt I3NCB5 ENTREZGENE, UniProtKB/TrEMBL