Ca3 (carbonic anhydrase 3) - Rat Genome Database

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Gene: Ca3 (carbonic anhydrase 3) Ictidomys tridecemlineatus
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Symbol: Ca3
Name: carbonic anhydrase 3
RGD ID: 12543266
Description: ENCODES a protein that exhibits nickel cation binding (ortholog); phosphatase activity (ortholog); INVOLVED IN response to bacterium (ortholog); response to ethanol (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: carbonic anhydrase III, muscle specific
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,444,945 - 47,454,991 (-)NCBI
SpeTri2.0NW_004936544337,437 - 347,760 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Ca3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,444,945 - 47,454,991 (-)NCBI
SpeTri2.0NW_004936544337,437 - 347,760 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl885,373,436 - 85,449,040 (+)EnsemblGRCh38hg38GRCh38
GRCh38885,438,859 - 85,449,040 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37886,351,088 - 86,361,269 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,537,710 - 86,548,526 (+)NCBINCBI36hg18NCBI36
Build 34886,537,709 - 86,548,526NCBI
Celera882,356,136 - 82,366,348 (+)NCBI
Cytogenetic Map8q21.2NCBI
HuRef881,845,249 - 81,855,461 (+)NCBIHuRef
CHM1_1886,402,742 - 86,412,955 (+)NCBICHM1_1
Car3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,928,598 - 14,937,441 (+)NCBIGRCm39mm39
GRCm39 Ensembl314,928,572 - 14,937,583 (+)Ensembl
GRCm38314,863,538 - 14,872,381 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,863,512 - 14,872,523 (+)EnsemblGRCm38mm10GRCm38
MGSCv37314,863,538 - 14,872,381 (+)NCBIGRCm37mm9NCBIm37
MGSCv36314,840,282 - 14,849,125 (+)NCBImm8
Celera314,876,182 - 14,885,071 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map33.22NCBI
Ca3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2286,770,418 - 86,780,011 (-)NCBI
Rnor_6.0 Ensembl288,126,667 - 88,135,410 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0288,126,519 - 88,136,063 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02107,900,433 - 107,909,977 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4288,106,727 - 88,114,686 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1288,050,843 - 88,059,683 (-)NCBI
Celera282,369,065 - 82,377,024 (-)NCBICelera
Cytogenetic Map2q23NCBI
Ca3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,362,492 - 3,372,932 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,362,091 - 3,372,270 (+)NCBIChiLan1.0ChiLan1.0
CA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1883,574,931 - 83,585,737 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0881,965,041 - 81,976,133 (+)NCBIMhudiblu_PPA_v0panPan3
CA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,935,192 - 31,945,585 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,935,172 - 31,980,579 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02932,083,862 - 32,094,321 (+)NCBI
UMICH_Zoey_3.12932,135,278 - 32,145,713 (+)NCBI
UNSW_CanFamBas_1.02932,156,474 - 32,166,928 (+)NCBI
UU_Cfam_GSD_1.02932,543,269 - 32,553,756 (+)NCBI
CA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,219,736 - 51,237,846 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,227,485 - 51,237,861 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,190,405 - 56,200,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CA3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,805,296 - 80,816,127 (+)NCBI
ChlSab1.1 Ensembl880,805,134 - 80,816,190 (+)Ensembl
Ca3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247446,202,151 - 6,211,662 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005328627   ⟹   XP_005328684
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530347,444,945 - 47,454,991 (-)NCBI
SpeTri2.0NW_004936544337,437 - 347,760 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328684 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005328684   ⟸   XM_005328627
- Sequence:
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016161 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014468 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016163 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
  Carbonic_anhydrase_CA3 UniProtKB/TrEMBL
NCBI Gene Ca3 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF127 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt I3MR08_ICTTR UniProtKB/TrEMBL