Stam (signal transducing adaptor molecule) - Rat Genome Database

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Gene: Stam (signal transducing adaptor molecule) Ictidomys tridecemlineatus
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Symbol: Stam
Name: signal transducing adaptor molecule
RGD ID: 12541479
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); ubiquitin binding (inferred); ubiquitin-like protein ligase binding (inferred); INVOLVED IN positive regulation of exosomal secretion (inferred); protein transport (inferred); regulation of extracellular exosome assembly (inferred); PARTICIPATES IN interleukin-2 signaling pathway; ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); Imerslund-Grasbeck Syndrome (ortholog); FOUND IN ESCRT-0 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signal transducing adapter molecule 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934418,270,841 - 18,333,310 (+)NCBI
SpeTri2.0NW_0049365209,627,674 - 9,689,658 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Stam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934418,270,841 - 18,333,310 (+)NCBI
SpeTri2.0NW_0049365209,627,674 - 9,689,658 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381017,644,151 - 17,716,824 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1017,644,151 - 17,716,824 (+)EnsemblGRCh38hg38GRCh38
GRCh371017,686,150 - 17,758,823 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361017,726,130 - 17,797,913 (+)NCBINCBI36hg18NCBI36
Build 341017,726,129 - 17,797,913NCBI
Celera1017,619,602 - 17,691,384 (+)NCBI
Cytogenetic Map10p12.33NCBI
HuRef1017,598,859 - 17,671,557 (+)NCBIHuRef
CHM1_11017,686,508 - 17,759,210 (+)NCBICHM1_1
T2T-CHM13v2.01017,662,652 - 17,736,129 (+)NCBI
Stam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39214,078,910 - 14,153,296 (+)NCBIGRCm39mm39
GRCm39 Ensembl214,078,909 - 14,154,445 (+)Ensembl
GRCm38214,073,962 - 14,148,338 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl214,074,098 - 14,149,634 (+)EnsemblGRCm38mm10GRCm38
MGSCv37213,995,739 - 14,069,965 (+)NCBIGRCm37mm9NCBIm37
MGSCv36213,991,866 - 14,066,092 (+)NCBImm8
Celera213,978,783 - 14,051,519 (+)NCBICelera
Cytogenetic Map2A2NCBI
Stam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21777,120,235 - 77,166,173 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1777,120,158 - 77,166,467 (+)Ensembl
Rnor_6.01781,209,795 - 81,256,111 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1781,209,867 - 81,255,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01782,954,327 - 83,002,657 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41788,276,082 - 88,321,955 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1776,453,145 - 76,499,077 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Stam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542910,306,957 - 10,366,081 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542910,306,957 - 10,366,072 (-)NCBIChiLan1.0ChiLan1.0
STAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11018,232,548 - 18,305,169 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1018,232,548 - 18,305,197 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01017,962,759 - 18,035,654 (+)NCBIMhudiblu_PPA_v0panPan3
STAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1219,264,392 - 19,344,187 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl219,266,055 - 19,344,045 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha216,365,991 - 16,445,808 (-)NCBI
ROS_Cfam_1.0219,553,884 - 19,634,156 (-)NCBI
ROS_Cfam_1.0 Ensembl219,553,652 - 19,652,382 (-)Ensembl
UMICH_Zoey_3.1216,756,688 - 16,836,708 (-)NCBI
UNSW_CanFamBas_1.0217,592,245 - 17,672,295 (-)NCBI
UU_Cfam_GSD_1.0218,212,306 - 18,292,067 (-)NCBI
STAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1043,947,010 - 44,016,058 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11043,946,990 - 44,016,064 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21048,632,911 - 48,699,716 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1917,590,252 - 17,662,278 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl917,590,268 - 17,663,986 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605123,235,162 - 23,320,904 (+)NCBIVero_WHO_p1.0
Stam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479610,201,518 - 10,269,311 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462479610,195,897 - 10,269,311 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005325800   ⟹   XP_005325857
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934418,270,841 - 18,333,310 (+)NCBI
SpeTri2.0NW_0049365209,627,674 - 9,689,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040276922   ⟹   XP_040132856
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934418,294,236 - 18,333,310 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005325857 (Get FASTA)   NCBI Sequence Viewer  
  XP_040132856 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3257564 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005325857   ⟸   XM_005325800
- Peptide Label: isoform X1
- UniProtKB: I3NE41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040132856   ⟸   XM_040276922
- Peptide Label: isoform X2
Protein Domains
SH3   VHS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021902 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000022638 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020908 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.90 UniProtKB/TrEMBL
InterPro ENTH_VHS UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  STAM1_SH3 UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
  VHS_dom UniProtKB/TrEMBL
NCBI Gene Stam ENTREZGENE
Pfam SH3_1 UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
Superfamily-SCOP SSF48464 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt I3NE41 ENTREZGENE, UniProtKB/TrEMBL