B4galt2 (beta-1,4-galactosyltransferase 2) - Rat Genome Database

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Gene: B4galt2 (beta-1,4-galactosyltransferase 2) Ictidomys tridecemlineatus
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Symbol: B4galt2
Name: beta-1,4-galactosyltransferase 2
RGD ID: 12540752
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); metal ion binding (inferred); transferase activity (inferred); INVOLVED IN brain development (ortholog); cerebellar Purkinje cell layer development (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN Golgi apparatus (inferred); Golgi cisterna membrane (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-1,4-galactosyltransferase 2, transcript variant X1; beta-1,4-galactosyltransferase 2, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,474,024 - 59,483,587 (+)NCBI
SpeTri2.0NW_00493647425,298,806 - 25,308,369 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B4galt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,474,024 - 59,483,587 (+)NCBI
SpeTri2.0NW_00493647425,298,806 - 25,308,369 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,979,210 - 43,991,171 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl143,978,943 - 43,991,170 (+)EnsemblGRCh38hg38GRCh38
GRCh37144,444,882 - 44,456,843 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,217,453 - 44,229,427 (+)NCBINCBI36hg18NCBI36
Build 34144,113,958 - 44,125,932NCBI
Celera142,728,400 - 42,740,377 (+)NCBI
Cytogenetic Map1p34.1NCBI
HuRef142,560,474 - 42,572,348 (+)NCBIHuRef
CHM1_1144,561,188 - 44,573,009 (+)NCBICHM1_1
T2T-CHM13v2.0143,850,290 - 43,862,258 (+)NCBI
B4galt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,730,197 - 117,740,759 (-)NCBIGRCm39mm39
GRCm39 Ensembl4117,726,457 - 117,740,684 (-)Ensembl
GRCm384117,873,000 - 117,883,519 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,869,260 - 117,883,487 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,545,624 - 117,556,074 (-)NCBIGRCm37mm9NCBIm37
MGSCv364117,370,951 - 117,381,401 (-)NCBImm8
MGSCv364115,635,718 - 115,646,319 (-)NCBImm8
Celera4116,588,125 - 116,598,635 (-)NCBICelera
Cytogenetic Map4D1NCBI
B4galt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25131,412,541 - 131,422,573 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5131,412,541 - 131,421,013 (-)Ensembl
Rnor_6.05136,707,510 - 136,717,345 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,707,510 - 136,715,981 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,496,559 - 140,506,399 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,338,706 - 138,347,177 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15138,343,934 - 138,353,941 (-)NCBI
Celera5129,960,919 - 129,969,390 (-)NCBICelera
Cytogenetic Map5q36NCBI
B4galt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,505,596 - 3,516,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,506,836 - 3,516,436 (+)NCBIChiLan1.0ChiLan1.0
B4GALT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1144,652,135 - 44,664,401 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,652,906 - 44,664,401 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0143,281,011 - 43,292,992 (+)NCBIMhudiblu_PPA_v0panPan3
B4GALT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,272,051 - 16,281,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,255,986 - 16,281,165 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,392,976 - 16,402,311 (-)NCBI
ROS_Cfam_1.01516,426,595 - 16,435,923 (-)NCBI
ROS_Cfam_1.0 Ensembl1516,427,031 - 16,435,500 (-)Ensembl
UMICH_Zoey_3.11516,225,472 - 16,234,807 (-)NCBI
UNSW_CanFamBas_1.01516,294,479 - 16,303,814 (-)NCBI
UU_Cfam_GSD_1.01516,367,206 - 16,376,542 (-)NCBI
B4GALT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,305,908 - 167,315,871 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,305,903 - 167,316,009 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,765,901 - 154,772,143 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,814,667 - 88,826,688 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603328,100,964 - 28,112,968 (+)NCBIVero_WHO_p1.0
B4galt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248923,259,819 - 3,270,464 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248923,260,008 - 3,270,464 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005317934   ⟹   XP_005317991
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,474,080 - 59,483,587 (+)NCBI
SpeTri2.0NW_00493647425,299,004 - 25,308,369 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005317935   ⟹   XP_005317992
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,474,024 - 59,483,587 (+)NCBI
SpeTri2.0NW_00493647425,298,806 - 25,308,369 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288523   ⟹   XP_040144457
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,474,079 - 59,482,849 (+)NCBI
RefSeq Acc Id: XM_040288524   ⟹   XP_040144458
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,474,080 - 59,483,587 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005317992   ⟸   XM_005317935
- Peptide Label: isoform X3
- UniProtKB: I3M476 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005317991   ⟸   XM_005317934
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040144457   ⟸   XM_040288523
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040144458   ⟸   XM_040288524
- Peptide Label: isoform X3
Protein Domains
Glyco_transf_7C   Glyco_transf_7N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004430 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000003964 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000027121 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004420 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000042841 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene B4galt2 ENTREZGENE
PANTHER PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3M476 ENTREZGENE, UniProtKB/TrEMBL