Ssbp3 (single stranded DNA binding protein 3) - Rat Genome Database

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Gene: Ssbp3 (single stranded DNA binding protein 3) Ictidomys tridecemlineatus
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Symbol: Ssbp3
Name: single stranded DNA binding protein 3
RGD ID: 12540692
Description: ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN head development (ortholog); head morphogenesis (ortholog); hematopoietic progenitor cell differentiation (ortholog); FOUND IN protein-containing complex (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: single-stranded DNA-binding protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,458,512 - 68,614,243 (-)NCBI
SpeTri2.0NW_0049365226,802,057 - 6,957,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Ssbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,458,512 - 68,614,243 (-)NCBI
SpeTri2.0NW_0049365226,802,057 - 6,957,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl154,225,433 - 54,413,479 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl154,225,432 - 54,413,479 (-)EnsemblGRCh38hg38GRCh38
GRCh38154,225,432 - 54,413,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37154,691,105 - 54,872,067 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36154,464,783 - 54,644,680 (-)NCBINCBI36hg18NCBI36
Build 34154,404,615 - 54,583,917NCBI
Celera152,979,826 - 53,159,767 (-)NCBI
Cytogenetic Map1p32.3NCBI
HuRef152,806,513 - 52,987,387 (-)NCBIHuRef
CHM1_1154,807,651 - 54,988,420 (-)NCBICHM1_1
Ssbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394106,768,667 - 106,906,891 (+)NCBIGRCm39mm39
GRCm39 Ensembl4106,767,898 - 106,906,891 (+)Ensembl
GRCm384106,911,470 - 107,049,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4106,910,701 - 107,049,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv374106,584,075 - 106,722,299 (+)NCBIGRCm37mm9NCBIm37
MGSCv364106,409,402 - 106,547,626 (+)NCBImm8
Celera4105,272,425 - 105,410,615 (+)NCBICelera
Cytogenetic Map4C7NCBI
Ssbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25121,691,370 - 121,828,035 (+)NCBI
Rnor_6.0 Ensembl5126,511,350 - 126,648,661 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05126,511,339 - 126,649,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05130,364,154 - 130,500,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45127,987,980 - 128,127,771 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15127,993,205 - 128,132,997 (+)NCBI
Celera5120,438,879 - 120,575,397 (+)NCBICelera
Cytogenetic Map5q34NCBI
Ssbp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554644,901,151 - 5,047,656 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554644,901,150 - 5,049,341 (+)NCBIChiLan1.0ChiLan1.0
SSBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1155,094,800 - 55,281,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl155,094,820 - 55,272,207 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0153,501,656 - 53,680,682 (-)NCBIMhudiblu_PPA_v0panPan3
SSBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1554,690,632 - 54,826,691 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl554,662,840 - 54,824,960 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha554,729,165 - 54,893,490 (+)NCBI
ROS_Cfam_1.0554,849,788 - 55,013,185 (+)NCBI
UMICH_Zoey_3.1554,844,717 - 55,009,418 (+)NCBI
UNSW_CanFamBas_1.0554,734,421 - 54,898,735 (+)NCBI
UU_Cfam_GSD_1.0555,123,610 - 55,288,431 (+)NCBI
SSBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6157,911,651 - 158,081,420 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16157,911,583 - 158,081,478 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SSBP3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12078,528,630 - 78,708,518 (+)NCBI
Vero_WHO_p1.0NW_02366603338,577,763 - 38,758,509 (-)NCBI
Ssbp3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624934161,323 - 313,621 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013358958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013358958   ⟹   XP_013214412
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505868,458,512 - 68,614,243 (-)NCBI
SpeTri2.0NW_0049365226,802,057 - 6,957,640 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013214412 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013214412   ⟸   XM_013358958
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028647 UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000015639 UniProtKB/TrEMBL
  ENSSTOP00000032085 UniProtKB/TrEMBL
  ENSSTOP00000032306 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024582 UniProtKB/TrEMBL
  ENSSTOT00000036139 UniProtKB/TrEMBL
  ENSSTOT00000041518 UniProtKB/TrEMBL
InterPro SSDP_DNA-bd UniProtKB/TrEMBL
NCBI Gene Ssbp3 ENTREZGENE
PRINTS SSDNABINDING UniProtKB/TrEMBL
UniProt A0A287DEU6_ICTTR UniProtKB/TrEMBL
  A0A287DFG1_ICTTR UniProtKB/TrEMBL
  I3MU44_ICTTR UniProtKB/TrEMBL