Ndufs1 (NADH:ubiquinone oxidoreductase core subunit S1) - Rat Genome Database

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Gene: Ndufs1 (NADH:ubiquinone oxidoreductase core subunit S1) Ictidomys tridecemlineatus
Analyze
Symbol: Ndufs1
Name: NADH:ubiquinone oxidoreductase core subunit S1
RGD ID: 12540070
Description: ENCODES a protein that exhibits electron transfer activity (ortholog); NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); ATP metabolic process (ortholog); cellular respiration (ortholog); ASSOCIATED WITH cystic fibrosis (ortholog); Disease Progression (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrial respiratory chain complex I (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial; NADH:ubiquinone oxidoreductase core subunit S1, transcript variant X1; NADH:ubiquinone oxidoreductase core subunit S1, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,868,082 - 162,903,922 (-)NCBI
SpeTri2.0NW_0049366312,503,353 - 2,538,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Ndufs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,868,082 - 162,903,922 (-)NCBI
SpeTri2.0NW_0049366312,503,353 - 2,538,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2206,114,817 - 206,159,509 (-)EnsemblGRCh38hg38GRCh38
GRCh382206,114,817 - 206,159,444 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372206,979,541 - 207,024,168 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,696,048 - 206,732,432 (-)NCBINCBI36hg18NCBI36
Build 342206,813,308 - 206,849,693NCBI
Celera2200,745,218 - 200,781,616 (-)NCBI
Cytogenetic Map2q33.3NCBI
HuRef2198,836,332 - 198,872,823 (-)NCBIHuRef
CHM1_12206,994,334 - 207,030,799 (-)NCBICHM1_1
Ndufs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,182,751 - 63,215,981 (-)NCBIGRCm39mm39
GRCm39 Ensembl163,182,755 - 63,215,992 (-)Ensembl
GRCm38163,143,592 - 63,176,822 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,143,596 - 63,176,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv37163,190,166 - 63,223,396 (-)NCBIGRCm37mm9NCBIm37
MGSCv36163,077,874 - 63,110,985 (-)NCBImm8
Celera163,653,959 - 63,687,212 (-)NCBICelera
Cytogenetic Map1C2NCBI
Ndufs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2964,546,430 - 64,579,751 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl969,919,867 - 69,953,182 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0969,919,863 - 69,953,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0969,728,932 - 69,762,079 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,798,141 - 61,831,964 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1961,945,124 - 61,978,946 (-)NCBI
Celera961,964,379 - 61,997,783 (-)NCBICelera
Cytogenetic Map9q32NCBI
Ndufs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554578,838,216 - 8,883,481 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554578,838,216 - 8,879,059 (+)NCBIChiLan1.0ChiLan1.0
NDUFS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B211,493,021 - 211,528,496 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B211,493,021 - 211,528,496 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B93,363,092 - 93,399,326 (-)NCBIMhudiblu_PPA_v0panPan3
NDUFS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13714,680,908 - 14,713,838 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3714,683,083 - 14,713,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3715,557,654 - 15,590,612 (-)NCBI
ROS_Cfam_1.03714,616,264 - 14,649,231 (-)NCBI
UMICH_Zoey_3.13714,570,542 - 14,603,481 (-)NCBI
UNSW_CanFamBas_1.03714,542,759 - 14,575,738 (-)NCBI
UU_Cfam_GSD_1.03714,539,074 - 14,572,034 (-)NCBI
NDUFS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15109,409,770 - 109,451,676 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115109,413,726 - 109,451,813 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215120,962,189 - 121,000,375 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11091,893,337 - 91,927,559 (-)NCBI
ChlSab1.1 Ensembl1091,893,616 - 91,927,592 (-)Ensembl
Vero_WHO_p1.0NW_023666040107,451,554 - 107,485,782 (+)NCBI
Ndufs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247659,962,254 - 9,993,790 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005335103   ⟹   XP_005335160
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303162,868,082 - 162,903,919 (-)NCBI
SpeTri2.0NW_0049366312,503,353 - 2,538,957 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013362784   ⟹   XP_013218238
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303162,868,082 - 162,903,687 (-)NCBI
SpeTri2.0NW_0049366312,503,370 - 2,538,945 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294786   ⟹   XP_040150720
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303162,868,082 - 162,903,920 (-)NCBI
RefSeq Acc Id: XM_040294787   ⟹   XP_040150721
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303162,868,082 - 162,903,922 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005335160   ⟸   XM_005335103
- Peptide Label: isoform X1
- UniProtKB: I3MF52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013218238   ⟸   XM_013362784
- Peptide Label: isoform X1
- UniProtKB: I3MF52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040150721   ⟸   XM_040294787
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040150720   ⟸   XM_040294786
- Peptide Label: isoform X1

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010255 ENTREZGENE
Ensembl Protein ENSSTOP00000009203 ENTREZGENE
NCBI Gene Ndufs1 ENTREZGENE
UniProt I3MF52 ENTREZGENE