Drap1 (DR1 associated protein 1) - Rat Genome Database

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Gene: Drap1 (DR1 associated protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Drap1
Name: DR1 associated protein 1
RGD ID: 12539936
Description: ENCODES a protein that exhibits DNA binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dr1-associated corepressor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,179,200 - 7,180,478 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,621,423 - 3,622,874 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,621,549 - 3,622,824 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Drap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,179,200 - 7,180,478 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,621,423 - 3,622,874 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,621,549 - 3,622,824 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DRAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,919,426 - 65,921,563 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,919,274 - 65,921,563 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,686,897 - 65,689,034 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,443,304 - 65,445,607 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,443,303 - 65,445,607NCBI
Celera1163,010,652 - 63,012,972 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1162,013,333 - 62,015,653 (+)NCBIHuRef
CHM1_11165,571,146 - 65,573,466 (+)NCBICHM1_1
T2T-CHM13v2.01165,912,504 - 65,914,641 (+)NCBIT2T-CHM13v2.0
Drap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,472,832 - 5,475,007 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,472,833 - 5,475,007 (-)EnsemblGRCm39 Ensembl
GRCm38195,422,804 - 5,424,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,422,805 - 5,424,979 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,422,811 - 5,424,916 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,422,811 - 5,424,916 (-)NCBIMGSCv36mm8
Celera195,295,108 - 5,297,119 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.32NCBI
Drap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,161,107 - 212,163,833 (-)NCBIGRCr8
mRatBN7.21202,731,775 - 202,734,468 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,731,788 - 202,734,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,084,142 - 211,086,781 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,177,180 - 218,179,830 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,868,217 - 210,870,867 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,803,783 - 220,806,480 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,803,796 - 220,806,433 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,733,114 - 227,735,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,067,906 - 208,070,556 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,221,550 - 208,224,057 (-)NCBI
Celera1200,267,073 - 200,269,723 (-)NCBICelera
Cytogenetic Map1q43NCBI
Drap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,406,106 - 19,408,232 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,406,106 - 19,408,232 (-)NCBIChiLan1.0ChiLan1.0
DRAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,147,909 - 67,150,135 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,190,741 - 68,192,903 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,279,681 - 61,281,881 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,608,245 - 64,610,031 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,608,245 - 64,610,031 (+)Ensemblpanpan1.1panPan2
DRAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,350,625 - 51,352,742 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,350,716 - 51,352,977 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,959,163 - 49,961,402 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,388,738 - 52,390,978 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,386,537 - 52,390,858 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,488,820 - 51,491,059 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,063,197 - 51,065,436 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,852,510 - 51,854,750 (-)NCBIUU_Cfam_GSD_1.0
DRAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,409,655 - 6,412,395 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,409,623 - 6,411,935 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,513,479 - 5,515,789 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DRAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,336,085 - 8,338,393 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,335,949 - 8,338,446 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,621,510 - 105,623,847 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Drap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,496,930 - 20,502,511 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,484,318 - 20,501,763 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000037123   ⟹   ENSSTOP00000027272
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365993,621,423 - 3,622,874 (-)Ensembl
RefSeq Acc Id: XM_005333561   ⟹   XP_005333618
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,179,200 - 7,180,478 (-)NCBI
SpeTri2.0NW_0049365993,621,549 - 3,622,824 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333618 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000027272.1
GenBank Protein KAG3284664 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005333618   ⟸   XM_005333561
- UniProtKB: A0A287D171 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000027272   ⟸   ENSSTOT00000037123


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029473 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000037123.1 UniProtKB/TrEMBL
NCBI Gene Drap1 ENTREZGENE
UniProt A0A287D171 ENTREZGENE, UniProtKB/TrEMBL