Slc4a1 (solute carrier family 4 member 1 (Diego blood group)) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc4a1 (solute carrier family 4 member 1 (Diego blood group)) Ictidomys tridecemlineatus
Analyze
Symbol: Slc4a1
Name: solute carrier family 4 member 1 (Diego blood group)
RGD ID: 12539765
Description: ENCODES a protein that exhibits actin binding (ortholog); enzyme binding (ortholog); obsolete anion:anion antiporter activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); blood coagulation (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH abetalipoproteinemia (ortholog); ACANTHOCYTOSIS (ortholog); Alkalosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); intercalated disc (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,460,919 - 18,477,383 (+)NCBI
SpeTri2.0NW_004936541718,577 - 727,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Slc4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,460,919 - 18,477,383 (+)NCBI
SpeTri2.0NW_004936541718,577 - 727,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381744,248,390 - 44,268,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1744,248,390 - 44,268,141 (-)EnsemblGRCh38hg38GRCh38
GRCh371742,325,758 - 42,345,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361739,682,566 - 39,700,993 (-)NCBINCBI36hg18NCBI36
Build 341739,682,565 - 39,700,993NCBI
Celera1739,034,465 - 39,054,210 (-)NCBI
Cytogenetic Map17q21.31NCBI
HuRef1738,089,106 - 38,108,850 (-)NCBIHuRef
CHM1_11742,561,259 - 42,581,020 (-)NCBICHM1_1
T2T-CHM13v2.01745,101,499 - 45,121,240 (-)NCBI
Slc4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,239,646 - 102,256,107 (-)NCBIGRCm39mm39
GRCm39 Ensembl11102,239,650 - 102,257,029 (-)Ensembl
GRCm3811102,348,820 - 102,365,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11102,348,824 - 102,366,203 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711102,210,134 - 102,226,595 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611102,164,917 - 102,181,205 (-)NCBImm8
Celera11114,058,195 - 114,074,658 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1166.29NCBI
Slc4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21087,306,865 - 87,323,132 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1087,306,872 - 87,323,117 (-)Ensembl
Rnor_6.01090,296,144 - 90,312,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1090,296,141 - 90,312,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01090,084,734 - 90,101,181 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,454,824 - 91,471,072 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11091,470,679 - 91,479,502 (-)NCBI
Celera1086,018,849 - 86,032,669 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Slc4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,315,024 - 17,328,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,318,600 - 17,330,943 (-)NCBIChiLan1.0ChiLan1.0
SLC4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11713,302,796 - 13,317,312 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,302,796 - 13,317,312 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01713,131,851 - 13,150,872 (+)NCBIMhudiblu_PPA_v0panPan3
SLC4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1919,142,884 - 19,159,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl919,146,480 - 19,157,915 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha918,535,326 - 18,546,756 (+)NCBI
ROS_Cfam_1.0919,836,393 - 19,852,954 (+)NCBI
ROS_Cfam_1.0 Ensembl919,839,985 - 19,851,420 (+)Ensembl
UMICH_Zoey_3.1918,693,717 - 18,705,143 (+)NCBI
UNSW_CanFamBas_1.0918,877,006 - 18,888,427 (+)NCBI
UU_Cfam_GSD_1.0919,021,401 - 19,032,836 (+)NCBI
SLC4A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1218,957,807 - 18,974,208 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11218,957,813 - 18,975,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,180,392 - 19,196,592 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11662,126,370 - 62,146,192 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1662,131,709 - 62,146,182 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607732,895,386 - 32,915,473 (+)NCBIVero_WHO_p1.0
Slc4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624795743,646 - 752,103 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624795739,821 - 752,773 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040268715   ⟹   XP_040124649
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560218,460,919 - 18,477,383 (+)NCBI
RefSeq Acc Id: XM_040268716   ⟹   XP_040124650
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560218,460,919 - 18,477,383 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040124649 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124650 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3268814 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_040124649   ⟸   XM_040268715
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040124650   ⟸   XM_040268716
- Peptide Label: isoform X2
Protein Domains
Band_3_cyto   HCO3_cotransp


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006533 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000005866.3 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006561.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.930.10 UniProtKB/TrEMBL
InterPro Anion_exchange UniProtKB/TrEMBL
  Anion_exchange_1 UniProtKB/TrEMBL
  Anion_exchange_CS UniProtKB/TrEMBL
  Band3_cytoplasmic_dom UniProtKB/TrEMBL
  HCO3_transpt_C UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/TrEMBL
NCBI Gene Slc4a1 ENTREZGENE
PANTHER PTHR11453 UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/TrEMBL
PRINTS ANIONEXCHNGR UniProtKB/TrEMBL
  ANIONEXHNGR1 UniProtKB/TrEMBL
  HCO3TRNSPORT UniProtKB/TrEMBL
PROSITE ANION_EXCHANGER_1 UniProtKB/TrEMBL
  ANION_EXCHANGER_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/TrEMBL
TIGRFAMs TIGR00834 UniProtKB/TrEMBL
UniProt I3M857_ICTTR UniProtKB/TrEMBL