Tnfaip2 (TNF alpha induced protein 2) - Rat Genome Database

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Gene: Tnfaip2 (TNF alpha induced protein 2) Ictidomys tridecemlineatus
Analyze
Symbol: Tnfaip2
Name: TNF alpha induced protein 2
RGD ID: 12538605
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis (ortholog); immunodeficiency 132A (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor alpha-induced protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,063,073 - 3,074,796 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366211,891,326 - 1,903,504 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tnfaip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,063,073 - 3,074,796 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366211,891,326 - 1,903,504 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFAIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,121,469 - 103,137,439 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,121,476 - 103,137,439 (+)EnsemblGRCh38hg38GRCh38
GRCh3714103,589,798 - 103,603,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,662,417 - 102,673,529 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414102,662,416 - 102,673,529NCBI
Celera1483,646,666 - 83,657,739 (+)NCBICelera
Cytogenetic Map14q32.32NCBI
HuRef1483,771,095 - 83,782,134 (+)NCBIHuRef
CHM1_114103,530,048 - 103,541,100 (+)NCBICHM1_1
T2T-CHM13v2.01497,357,363 - 97,373,355 (+)NCBIT2T-CHM13v2.0
Tnfaip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,408,898 - 111,421,452 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,408,903 - 111,421,452 (+)EnsemblGRCm39 Ensembl
GRCm3812111,442,450 - 111,455,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,442,469 - 111,455,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712112,680,872 - 112,693,229 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,892,770 - 111,902,825 (+)NCBIMGSCv36mm8
Celera12112,632,641 - 112,645,211 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.99NCBI
Tnfaip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,297,388 - 136,311,106 (+)NCBIGRCr8
mRatBN7.26130,476,832 - 130,489,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,476,889 - 130,489,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6130,646,992 - 130,660,017 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,942,980 - 130,956,005 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,306,961 - 130,319,987 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,890,869 - 135,903,647 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,890,931 - 135,903,647 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,512,073 - 144,524,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,196,746 - 136,210,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6128,033,680 - 128,046,938 (+)NCBICelera
Cytogenetic Map6q32NCBI
Tnfaip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,160,483 - 2,171,967 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555382,159,773 - 2,173,312 (+)NCBIChiLan1.0ChiLan1.0
TNFAIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,276,390 - 104,292,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114103,492,791 - 103,508,690 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,745,176 - 83,759,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,562,408 - 103,572,383 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14103,561,181 - 103,570,309 (+)Ensemblpanpan1.1panPan2
TNFAIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,965,776 - 70,977,807 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,967,741 - 70,976,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,476,799 - 70,489,979 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,241,603 - 71,254,791 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,244,886 - 71,253,380 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,904,950 - 70,918,118 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,969,797 - 70,982,976 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,369,924 - 71,383,105 (+)NCBIUU_Cfam_GSD_1.0
TNFAIP2
(Sus scrofa - pig)		 No map positions available.
TNFAIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,099,232 - 81,113,399 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,102,127 - 81,113,509 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605368,309,309 - 68,323,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfaip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,563,176 - 1,572,848 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,563,274 - 1,575,884 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040274238   ⟹   XP_040130172
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086403,063,073 - 3,074,796 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040130172 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3260304 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040130172   ⟸   XM_040274238


Additional Information

Database Acc Id Source(s)
NCBI Gene Tnfaip2 ENTREZGENE