Sgo2 (shugoshin 2) - Rat Genome Database

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Gene: Sgo2 (shugoshin 2) Ictidomys tridecemlineatus
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Symbol: Sgo2
Name: shugoshin 2
RGD ID: 12538281
Description: INVOLVED IN female meiotic nuclear division (ortholog); male meiotic nuclear division (ortholog); meiotic sister chromatid cohesion involved in meiosis I (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Pulmonary Arterial Hypertension (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog); kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: shugoshin-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,649,125 - 157,686,308 (+)NCBI
SpeTri2.0NW_004936825350,390 - 373,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Sgo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,649,125 - 157,686,308 (+)NCBI
SpeTri2.0NW_004936825350,390 - 373,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2200,510,008 - 200,584,096 (+)EnsemblGRCh38hg38GRCh38
GRCh382200,510,198 - 200,584,096 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372201,390,865 - 201,448,819 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,099,185 - 201,156,750 (+)NCBINCBI36hg18NCBI36
Build 342201,216,462 - 201,273,720NCBI
Celera2195,145,716 - 195,203,700 (+)NCBI
Cytogenetic Map2q33.1NCBI
HuRef2193,242,173 - 193,300,154 (+)NCBIHuRef
CHM1_12201,396,844 - 201,454,804 (+)NCBICHM1_1
Sgo2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,024,499 - 58,065,436 (+)NCBIGRCm39mm39
GRCm39 Ensembl158,035,130 - 58,065,058 (+)Ensembl
GRCm38157,985,340 - 58,026,277 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,995,971 - 58,025,899 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,042,184 - 58,083,121 (+)NCBIGRCm37mm9NCBIm37
MGSCv36157,940,612 - 57,970,443 (+)NCBImm8
Celera158,499,153 - 58,539,977 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.86NCBI
Sgo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2959,548,605 - 59,573,229 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl959,548,683 - 59,573,229 (+)Ensembl
Rnor_6.0964,898,380 - 64,923,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,898,459 - 64,923,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0964,695,921 - 64,720,561 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,664,634 - 56,681,534 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1956,809,175 - 56,834,098 (+)NCBI
Celera956,996,167 - 57,018,671 (+)NCBICelera
Cytogenetic Map9q31NCBI
Sgo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955403879,354 - 905,605 (-)NCBIChiLan1.0ChiLan1.0
SGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B205,943,126 - 205,994,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B205,943,783 - 205,994,197 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B87,779,677 - 87,837,285 (+)NCBIMhudiblu_PPA_v0panPan3
SGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,611,843 - 9,653,169 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,611,939 - 9,767,044 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3710,498,290 - 10,539,605 (+)NCBI
ROS_Cfam_1.0379,511,109 - 9,552,420 (+)NCBI
UMICH_Zoey_3.1379,499,086 - 9,540,357 (+)NCBI
UNSW_CanFamBas_1.0379,471,294 - 9,512,536 (+)NCBI
UU_Cfam_GSD_1.0379,469,608 - 9,511,797 (+)NCBI
SGO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,099,384 - 104,152,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,099,378 - 104,150,723 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,371,377 - 115,424,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SGO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,019,474 - 86,075,905 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,025,030 - 86,067,458 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040113,364,364 - 113,418,131 (-)NCBIVero_WHO_p1.0
Sgo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624889540,680 - 563,110 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005340867   ⟹   XP_005340924
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,654,525 - 157,686,308 (+)NCBI
SpeTri2.0NW_004936825350,390 - 373,005 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294671   ⟹   XP_040150605
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,654,525 - 157,686,308 (+)NCBI
RefSeq Acc Id: XM_040294672   ⟹   XP_040150606
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,654,672 - 157,686,308 (+)NCBI
RefSeq Acc Id: XM_040294673   ⟹   XP_040150607
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,649,125 - 157,686,308 (+)NCBI
RefSeq Acc Id: XM_040294674   ⟹   XP_040150608
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303157,661,351 - 157,686,308 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005340924   ⟸   XM_005340867
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040150607   ⟸   XM_040294673
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040150605   ⟸   XM_040294671
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040150606   ⟸   XM_040294672
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040150608   ⟸   XM_040294674
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021808 ENTREZGENE
NCBI Gene Sgo2 ENTREZGENE