Hcn3 (hyperpolarization activated cyclic nucleotide gated potassium channel 3) - Rat Genome Database

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Gene: Hcn3 (hyperpolarization activated cyclic nucleotide gated potassium channel 3) Ictidomys tridecemlineatus
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Symbol: Hcn3
Name: hyperpolarization activated cyclic nucleotide gated potassium channel 3
RGD ID: 12537415
Description: ENCODES a protein that exhibits intracellularly cAMP-activated cation channel activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to dopamine (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Dental Pulp Exposure (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN axon (ortholog); cone cell pedicle (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hyperpolarization activated cyclic nucleotide gated potassium channel 3, transcript variant X1; hyperpolarization activated cyclic nucleotide gated potassium channel 3, transcript variant X2; potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,729,923 - 25,740,189 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,760,241 - 4,772,583 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,760,289 - 4,770,571 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Hcn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,729,923 - 25,740,189 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,760,241 - 4,772,583 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,760,289 - 4,770,571 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HCN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,277,463 - 155,289,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,277,463 - 155,289,848 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,247,254 - 155,259,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,513,998 - 153,526,262 (+)NCBINCBI36Build 36hg18NCBI36
Celera1128,320,546 - 128,332,814 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1126,609,528 - 126,621,951 (+)NCBIHuRef
CHM1_11156,642,633 - 156,655,054 (+)NCBICHM1_1
T2T-CHM13v2.01154,416,023 - 154,428,409 (+)NCBIT2T-CHM13v2.0
Hcn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,054,082 - 89,067,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,053,381 - 89,067,503 (-)EnsemblGRCm39 Ensembl
GRCm38389,146,775 - 89,160,284 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,146,074 - 89,160,196 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,950,697 - 88,964,079 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,232,702 - 89,246,084 (-)NCBIMGSCv36mm8
Celera389,180,461 - 89,193,863 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.01NCBI
Hcn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,849,635 - 176,867,726 (-)NCBIGRCr8
mRatBN7.22174,551,861 - 174,567,459 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,551,680 - 174,565,966 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,698,627 - 181,711,803 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,721,001 - 179,734,174 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,320,946 - 174,334,027 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,458,851 - 188,471,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,454,853 - 188,471,988 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,875,210 - 207,888,575 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,224,322 - 181,237,190 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,174,427 - 181,187,296 (-)NCBI
Celera2168,495,658 - 168,508,727 (-)NCBICelera
Cytogenetic Map2q34NCBI
Hcn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,730,940 - 1,742,065 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,730,940 - 1,744,439 (+)NCBIChiLan1.0ChiLan1.0
HCN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,554,612 - 94,567,019 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,285,942 - 94,298,347 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,621,991 - 130,634,402 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,227,404 - 134,240,120 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,227,404 - 134,240,120 (+)Ensemblpanpan1.1panPan2
HCN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,272,756 - 42,282,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,273,571 - 42,282,595 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,757,808 - 41,773,533 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,136,070 - 42,151,801 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,141,810 - 42,151,845 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,915,938 - 41,931,660 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,969,733 - 41,985,635 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,253,734 - 42,269,448 (-)NCBIUU_Cfam_GSD_1.0
HCN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,547,416 - 94,560,106 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,545,919 - 94,560,105 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,327,690 - 103,342,236 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HCN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,546,609 - 8,558,911 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,545,720 - 8,558,056 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,887,885 - 7,899,940 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hcn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,272,935 - 2,281,588 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,271,991 - 2,281,575 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000008986   ⟹   ENSSTOP00000008052
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365804,760,241 - 4,772,583 (+)Ensembl
RefSeq Acc Id: XM_005331349   ⟹   XP_005331406
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505825,729,923 - 25,740,189 (+)NCBI
SpeTri2.0NW_0049365804,760,289 - 4,770,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287672   ⟹   XP_040143606
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505825,730,201 - 25,740,189 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005331406 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143606 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008052.2
GenBank Protein KAG3281733 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281734 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005331406   ⟸   XM_005331349
- Peptide Label: isoform X1
- UniProtKB: I3MCQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143606   ⟸   XM_040287672
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000008052   ⟸   ENSSTOT00000008986
Protein Domains
Cyclic nucleotide-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008989 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008986.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/TrEMBL
  Helix hairpin bin UniProtKB/TrEMBL
InterPro cNMP-bd-like UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  Ion_trans_N UniProtKB/TrEMBL
  K_chnl_volt-dep_EAG/ELK/ERG UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
NCBI Gene Hcn3 ENTREZGENE
PANTHER I[[H]] CHANNEL, ISOFORM E UniProtKB/TrEMBL
  POTASSIUM/SODIUM HYPERPOLARIZATION-ACTIVATED CYCLIC NUCLEOTIDE-GATED CHANNEL 3 UniProtKB/TrEMBL
Pfam cNMP_binding UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  Ion_trans_N UniProtKB/TrEMBL
PRINTS EAGCHANLFMLY UniProtKB/TrEMBL
PROSITE CNMP_BINDING_3 UniProtKB/TrEMBL
SMART cNMP UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt I3MCQ0 ENTREZGENE, UniProtKB/TrEMBL