Galnt18 (polypeptide N-acetylgalactosaminyltransferase 18) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Galnt18 (polypeptide N-acetylgalactosaminyltransferase 18) Ictidomys tridecemlineatus
Analyze
Symbol: Galnt18
Name: polypeptide N-acetylgalactosaminyltransferase 18
RGD ID: 12536882
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); glycosyltransferase activity (inferred); polypeptide N-acetylgalactosaminyltransferase activity (inferred); INVOLVED IN protein glycosylation (inferred); protein O-linked glycosylation (inferred); ASSOCIATED WITH genetic disease (ortholog); Okur-Chung Neurodevelopmental Syndrome (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494750,783,904 - 51,117,193 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365286,817,807 - 7,151,185 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365286,817,888 - 7,151,175 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Galnt18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494750,783,904 - 51,117,193 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365286,817,807 - 7,151,185 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365286,817,888 - 7,151,175 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381111,270,877 - 11,622,005 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1111,270,877 - 11,622,005 (-)EnsemblGRCh38hg38GRCh38
GRCh371111,292,424 - 11,643,552 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361111,248,999 - 11,600,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 341111,248,998 - 11,600,128NCBI
Celera1111,418,509 - 11,767,631 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef1110,969,675 - 11,319,341 (-)NCBIHuRef
CHM1_11111,292,068 - 11,642,726 (-)NCBICHM1_1
T2T-CHM13v2.01111,359,781 - 11,711,204 (-)NCBIT2T-CHM13v2.0
Galnt18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397111,070,863 - 111,379,274 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7111,070,868 - 111,379,184 (-)EnsemblGRCm39 Ensembl
GRCm387111,471,656 - 111,780,067 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7111,471,661 - 111,779,977 (-)EnsemblGRCm38mm10GRCm38
MGSCv377118,615,175 - 118,923,491 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367111,262,842 - 111,571,158 (-)NCBIMGSCv36mm8
Celera7111,449,253 - 111,757,632 (-)NCBICelera
Cytogenetic Map7E3- F1NCBI
cM Map758.19NCBI
Galnt18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,027,832 - 175,338,883 (-)NCBIGRCr8
mRatBN7.21165,593,180 - 165,904,268 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1165,593,187 - 165,904,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,923,657 - 174,234,606 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,109,695 - 181,420,626 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01173,806,420 - 174,115,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01176,296,186 - 176,607,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1176,296,193 - 176,607,466 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01183,278,632 - 183,588,615 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,251,518 - 169,567,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11169,362,179 - 169,677,550 (-)NCBI
Celera1163,477,060 - 163,780,234 (-)NCBICelera
Cytogenetic Map1q33NCBI
Galnt18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541426,811,907 - 27,146,528 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541426,812,056 - 27,146,036 (-)NCBIChiLan1.0ChiLan1.0
GALNT18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2913,718,354 - 14,068,919 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,681,396 - 14,031,552 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,440,220 - 11,790,301 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11111,134,627 - 11,484,543 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1111,134,897 - 11,484,074 (-)Ensemblpanpan1.1panPan2
GALNT18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12134,370,659 - 34,708,735 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2134,370,648 - 34,708,918 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2133,934,796 - 34,272,727 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02135,247,935 - 35,584,666 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2135,247,937 - 35,584,830 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12134,506,529 - 34,844,366 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02134,678,709 - 35,017,645 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02134,970,440 - 35,310,076 (-)NCBIUU_Cfam_GSD_1.0
GALNT18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl247,862,863 - 48,231,106 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1247,863,233 - 48,231,113 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2251,311,778 - 51,510,835 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1153,206,710 - 53,594,428 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038150,837,497 - 151,217,136 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247663,328,190 - 3,668,039 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247663,328,359 - 3,667,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000016193   ⟹   ENSSTOP00000014495
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365286,817,807 - 7,151,185 (+)Ensembl
RefSeq Acc Id: XM_005326796   ⟹   XP_005326853
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494750,783,908 - 51,117,193 (+)NCBI
SpeTri2.0NW_0049365286,817,888 - 7,151,175 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284740   ⟹   XP_040140674
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494750,783,905 - 51,114,808 (+)NCBI
RefSeq Acc Id: XM_040284741   ⟹   XP_040140675
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494750,783,907 - 51,117,192 (+)NCBI
RefSeq Acc Id: XM_040284742   ⟹   XP_040140676
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494750,783,906 - 51,114,805 (+)NCBI
RefSeq Acc Id: XM_040284743   ⟹   XP_040140677
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494750,783,904 - 51,114,816 (+)NCBI
RefSeq Acc Id: XM_040284744   ⟹   XP_040140678
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494750,783,907 - 51,117,192 (+)NCBI
RefSeq Acc Id: XP_005326853   ⟸   XM_005326796
- Peptide Label: isoform X4
- UniProtKB: I3MR30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140677   ⟸   XM_040284743
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040140674   ⟸   XM_040284740
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140676   ⟸   XM_040284742
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040140675   ⟸   XM_040284741
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040140678   ⟸   XM_040284744
- Peptide Label: isoform X6
RefSeq Acc Id: ENSSTOP00000014495   ⟸   ENSSTOT00000016193
Protein Domains
Ricin B lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016193 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016193.3 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
NCBI Gene Galnt18 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 18 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt I3MR30 ENTREZGENE, UniProtKB/TrEMBL