Slc1a4 (solute carrier family 1 member 4) - Rat Genome Database

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Gene: Slc1a4 (solute carrier family 1 member 4) Ictidomys tridecemlineatus
Analyze
Symbol: Slc1a4
Name: solute carrier family 1 member 4
RGD ID: 12536204
Description: ENCODES a protein that exhibits chloride channel activity (ortholog); L-alanine transmembrane transporter activity (ortholog); L-aspartate transmembrane transporter activity (ortholog); INVOLVED IN cognition (ortholog); hydroxyproline transport (ortholog); L-alanine import across plasma membrane (ortholog); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; ASSOCIATED WITH genetic disease (ortholog); microcephaly (ortholog); Spastic Tetraplegia, Thin Corpus Callosum, and Progressive Microcephaly (ortholog); FOUND IN centrosome (ortholog); dendrite (ortholog); intermediate filament (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: neutral amino acid transporter A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629218,780,757 - 18,810,279 (-)NCBI
SpeTri2.0NW_0049364919,761,002 - 9,790,535 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Slc1a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629218,780,757 - 18,810,279 (-)NCBI
SpeTri2.0NW_0049364919,761,002 - 9,790,535 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC1A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl264,988,477 - 65,023,865 (+)EnsemblGRCh38hg38GRCh38
GRCh38264,988,479 - 65,023,865 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37265,215,613 - 65,250,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36265,070,098 - 65,104,503 (+)NCBINCBI36hg18NCBI36
Build 34265,128,244 - 65,162,648NCBI
Celera265,061,957 - 65,097,385 (+)NCBI
Cytogenetic Map2p14NCBI
HuRef264,949,345 - 64,984,802 (+)NCBIHuRef
CHM1_1265,146,566 - 65,181,989 (+)NCBICHM1_1
Slc1a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,252,180 - 20,282,713 (-)NCBIGRCm39mm39
GRCm39 Ensembl1120,252,180 - 20,282,713 (-)Ensembl
GRCm381120,302,180 - 20,332,713 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,302,180 - 20,332,713 (-)EnsemblGRCm38mm10GRCm38
MGSCv371120,202,183 - 20,232,716 (-)NCBIGRCm37mm9NCBIm37
MGSCv361120,202,208 - 20,232,674 (-)NCBImm8
Celera1122,451,521 - 22,482,559 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1112.97NCBI
Slc1a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21494,530,801 - 94,560,190 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1494,529,084 - 94,560,418 (-)Ensembl
Rnor_6.014104,582,884 - 104,612,417 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14104,581,190 - 104,612,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014104,317,800 - 104,345,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414101,123,740 - 101,153,790 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114101,142,950 - 101,173,001 (-)NCBI
Celera1493,550,109 - 93,578,743 (-)NCBICelera
Cytogenetic Map14q22NCBI
Slc1a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542419,474,082 - 19,499,592 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542419,474,082 - 19,499,592 (-)NCBIChiLan1.0ChiLan1.0
SLC1A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A66,177,835 - 66,212,249 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A66,176,925 - 66,209,615 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A65,051,025 - 65,086,917 (+)NCBIMhudiblu_PPA_v0panPan3
SLC1A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11064,482,840 - 64,508,288 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1064,483,060 - 64,505,747 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1064,369,739 - 64,394,932 (+)NCBI
ROS_Cfam_1.01065,493,157 - 65,518,318 (+)NCBI
UMICH_Zoey_3.11065,172,083 - 65,197,216 (+)NCBI
UNSW_CanFamBas_1.01065,480,918 - 65,503,851 (+)NCBI
UU_Cfam_GSD_1.01065,774,013 - 65,799,174 (+)NCBI
SLC1A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl376,938,105 - 76,970,508 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1376,938,102 - 76,970,519 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2380,747,982 - 80,754,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC1A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11441,999,216 - 42,032,326 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1441,999,064 - 42,032,288 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604569,848,255 - 69,881,833 (+)NCBIVero_WHO_p1.0
Slc1a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247628,532,550 - 8,558,912 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005322070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005322070   ⟹   XP_005322127
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629218,780,757 - 18,810,279 (-)NCBI
SpeTri2.0NW_0049364919,761,002 - 9,790,535 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005322127 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3267222 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005322127   ⟸   XM_005322070
- UniProtKB: I3N5J6 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025160 ENTREZGENE
Ensembl Protein ENSSTOP00000019642 ENTREZGENE
NCBI Gene Slc1a4 ENTREZGENE
UniProt I3N5J6 ENTREZGENE