LOC106144841 (protocadherin gamma-A11) - Rat Genome Database

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Gene: LOC106144841 (protocadherin gamma-A11) Ictidomys tridecemlineatus
Analyze
Symbol: LOC106144841
Name: protocadherin gamma-A11
RGD ID: 12536182
Description: ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Pcdhga11; protocadherin gamma subfamily A, 11
RGD Orthologs
Human
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213151,152,774 - 151,155,230 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650412,726,747 - 12,729,203 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISO)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC106144841
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213151,152,774 - 151,155,230 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650412,726,747 - 12,729,203 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDHGA11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,421,051 - 141,512,975 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,421,047 - 141,512,975 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,800,618 - 140,892,542 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,780,721 - 140,872,730 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,780,720 - 140,872,730NCBI
Celera5136,877,359 - 136,969,282 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,945,733 - 136,037,386 (+)NCBIHuRef
CHM1_15140,233,800 - 140,325,823 (+)NCBICHM1_1
T2T-CHM13v2.05141,946,885 - 142,038,959 (+)NCBIT2T-CHM13v2.0
Pcdhga11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391837,888,826 - 37,974,926 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1837,888,784 - 37,974,926 (+)EnsemblGRCm39 Ensembl
GRCm381837,755,773 - 37,841,873 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,755,731 - 37,841,873 (+)EnsemblGRCm38mm10GRCm38
MGSCv371837,915,427 - 38,001,527 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361837,881,747 - 37,967,847 (+)NCBIMGSCv36mm8
Celera1839,089,706 - 39,185,352 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.62NCBI
Pcdhga11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81829,834,606 - 29,919,095 (+)NCBIGRCr8
mRatBN7.21829,583,373 - 29,667,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,493,954 - 29,667,868 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1829,687,711 - 29,772,190 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01830,449,461 - 30,534,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01829,784,784 - 29,869,511 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01830,904,364 - 30,971,113 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1830,904,498 - 30,906,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,598,591 - 30,662,065 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,664,524 - 30,754,205 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,692,871 - 30,692,968 (+)NCBI
Celera1829,229,862 - 29,311,954 (+)NCBICelera
Cytogenetic Map18p11NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013358098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013358098   ⟹   XP_013213552
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213151,152,774 - 151,155,230 (-)NCBI
SpeTri2.0NW_00493650412,726,747 - 12,729,203 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013213552 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3266095 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013213552   ⟸   XM_013358098
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Pcdhga11 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC106144841  protocadherin gamma-A11  Pcdhga11  protocadherin gamma subfamily A, 11  Symbol and/or name change 5135510 APPROVED