Tafa5 (TAFA chemokine like family member 5) - Rat Genome Database

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Gene: Tafa5 (TAFA chemokine like family member 5) Ictidomys tridecemlineatus
Analyze
Symbol: Tafa5
Name: TAFA chemokine like family member 5
RGD ID: 12535581
Description: ENCODES a protein that exhibits G protein-coupled receptor binding (inferred); receptor ligand activity (inferred); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of vascular associated smooth muscle cell migration (ortholog); negative regulation of vascular associated smooth muscle cell proliferation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chemokine-like protein TAFA-5; Fam19a5; family with sequence similarity 19 member A5, C-C motif chemokine like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049451,781,171 - 1,906,215 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366291,781,156 - 1,906,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366291,781,169 - 1,906,215 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tafa5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049451,781,171 - 1,906,215 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366291,781,156 - 1,906,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366291,781,169 - 1,906,215 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAFA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382248,489,553 - 48,751,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2248,489,553 - 48,850,912 (+)EnsemblGRCh38hg38GRCh38
GRCh372248,885,365 - 49,147,744 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362247,428,841 - 47,533,750 (+)NCBINCBI36Build 36hg18NCBI36
Build 342247,363,699 - 47,468,605NCBI
Celera2232,799,018 - 33,062,366 (+)NCBICelera
Cytogenetic Map22q13.32NCBI
HuRef2231,967,780 - 32,090,939 (+)NCBIHuRef
CHM1_12248,844,010 - 49,106,139 (+)NCBICHM1_1
T2T-CHM13v2.02248,982,039 - 49,245,797 (+)NCBIT2T-CHM13v2.0
Tafa5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391587,428,405 - 87,643,565 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1587,428,500 - 87,643,565 (+)EnsemblGRCm39 Ensembl
GRCm381587,544,219 - 87,759,364 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1587,544,299 - 87,759,364 (+)EnsemblGRCm38mm10GRCm38
MGSCv371587,455,660 - 87,589,794 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361587,452,996 - 87,587,130 (+)NCBIMGSCv36mm8
Celera1589,759,876 - 89,888,462 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1542.1NCBI
Tafa5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87120,493,447 - 120,714,720 (+)NCBIGRCr8
mRatBN7.27118,613,731 - 118,835,016 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7118,613,889 - 118,834,353 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7120,365,143 - 120,585,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07122,591,575 - 122,811,429 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07122,561,074 - 122,780,798 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07128,500,009 - 128,728,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7128,500,011 - 128,728,928 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07128,196,289 - 128,420,388 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47125,835,416 - 126,056,345 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7115,110,201 - 115,330,283 (+)NCBICelera
Cytogenetic Map7q34NCBI
Tafa5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541332,094,438 - 32,200,329 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541332,094,438 - 32,200,276 (+)NCBIChiLan1.0ChiLan1.0
TAFA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22358,357,083 - 58,625,544 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12261,042,632 - 61,310,799 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02228,675,007 - 28,943,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12247,793,039 - 47,976,118 (+)NCBIpanpan1.1PanPan1.1panPan2
TAFA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11018,093,455 - 18,186,776 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1018,083,899 - 18,236,736 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01018,830,722 - 18,985,497 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1018,832,711 - 18,985,719 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11018,550,683 - 18,703,644 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01018,860,924 - 19,016,176 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01019,005,700 - 19,160,385 (-)NCBIUU_Cfam_GSD_1.0
TAFA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl51,414,144 - 1,569,846 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.151,413,030 - 1,569,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TAFA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11930,985,913 - 31,247,087 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1931,073,084 - 31,247,161 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604594,173,808 - 94,467,842 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tafa5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247521,649,367 - 1,754,681 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247521,649,875 - 1,754,591 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000025392   ⟹   ENSSTOP00000018298
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366291,781,156 - 1,906,221 (-)Ensembl
RefSeq Acc Id: XM_005335014   ⟹   XP_005335071
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049451,781,171 - 1,906,215 (-)NCBI
SpeTri2.0NW_0049366291,781,169 - 1,906,215 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040276590   ⟹   XP_040132524
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049451,781,171 - 1,854,889 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005335071 (Get FASTA)   NCBI Sequence Viewer  
  XP_040132524 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018298.2
GenBank Protein KAG3290701 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005335071   ⟸   XM_005335014
- Peptide Label: isoform X1
- UniProtKB: I3N1Q2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040132524   ⟸   XM_040276590
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000018298   ⟸   ENSSTOT00000025392


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019476 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025392.2 UniProtKB/TrEMBL
InterPro Chemokine-like_TAFA UniProtKB/TrEMBL
  TAFA-5 UniProtKB/TrEMBL
NCBI Gene Fam19a5 ENTREZGENE
PANTHER CHEMOKINE-LIKE PROTEIN TAFA-5 UniProtKB/TrEMBL
  PTHR31878 UniProtKB/TrEMBL
Pfam TAFA UniProtKB/TrEMBL
UniProt I3N1Q2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-22 Tafa5  TAFA chemokine like family member 5  Fam19a5  family with sequence similarity 19 member A5, C-C motif chemokine like  Symbol and/or name change 5135510 APPROVED