Glra1 (glycine receptor alpha 1) - Rat Genome Database

Name: Glra1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Glra1 (glycine receptor alpha 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Glra1

Name:

glycine receptor alpha 1

RGD ID:

12534711

Description:

ENCODES a protein that exhibits extracellularly glycine-gated chloride channel activity (ortholog); extracellularly glycine-gated ion channel activity (ortholog); glycine binding (ortholog); INVOLVED IN acrosome reaction (ortholog); adult walking behavior (ortholog); chemical synaptic transmission (ortholog); PARTICIPATES IN Inhibitory synaptic transmission pathway; ASSOCIATED WITH dystonia (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN calyx of Held (ortholog); endoplasmic reticulum (ortholog); glycinergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

glycine receptor alpha 1, transcript variant X1; glycine receptor alpha 1, transcript variant X2; glycine receptor subunit alpha-1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	112,367,383 - 112,460,891 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	10,817,422 - 10,896,958 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	10,816,712 - 10,896,958 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dystonia (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

hyperekplexia (ISO)

hyperekplexia 1 (ISO)

Myoclonus (ISO)

Stiff-Person syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acrosome reaction (IEA,ISO)

adult walking behavior (IEA,ISO)

cellular response to amino acid stimulus (IEA)

cellular response to ethanol (IEA)

cellular response to zinc ion (IEA)

chemical synaptic transmission (IEA,ISO)

chemical synaptic transmission, postsynaptic (ISO)

chloride transmembrane transport (IEA)

chloride transport (IEA,ISO)

excitatory postsynaptic potential (IEA)

inhibitory postsynaptic potential (IEA,ISO)

monoatomic anion transport (ISO)

monoatomic ion transmembrane transport (IEA,ISO)

monoatomic ion transport (IEA)

muscle contraction (IEA)

negative regulation of transmission of nerve impulse (IEA)

neuromuscular process (IEA,ISO)

neuromuscular process controlling posture (IEA,ISO)

neuronal action potential (IEA,ISO)

neuropeptide signaling pathway (IEA)

positive regulation of acrosome reaction (IEA)

regulation of membrane potential (IEA,ISO)

regulation of postsynaptic membrane potential (ISO)

regulation of presynaptic membrane potential (IEA)

regulation of respiratory gaseous exchange (IEA,ISO)

regulation of respiratory gaseous exchange by nervous system process (IEA,ISO)

response to alcohol (IEA)

response to amino acid (IEA)

righting reflex (IEA,ISO)

startle response (IEA,ISO)

synaptic transmission, glycinergic (IEA,ISO)

visual perception (IEA,ISO)

Cellular Component

calyx of Held (ISO)

cell projection (IEA)

chloride channel complex (IEA)

dendrite (IEA)

endoplasmic reticulum (ISO)

external side of plasma membrane (IEA)

glycinergic synapse (IEA,ISO)

inhibitory synapse (IEA)

intracellular membrane-bounded organelle (IEA)

membrane (IEA)

neuron projection (IEA)

neuronal cell body (IEA)

perikaryon (IEA)

plasma membrane (IEA)

postsynaptic membrane (IEA)

postsynaptic specialization membrane (ISO)

presynaptic membrane (ISO)

synapse (IEA)

synaptic membrane (IEA)

Molecular Function

chloride channel activity (IEA)

excitatory extracellular ligand-gated monoatomic ion channel activity (IEA)

extracellular ligand-gated monoatomic ion channel activity (IEA)

extracellularly glycine-gated chloride channel activity (IEA,ISO)

extracellularly glycine-gated ion channel activity (ISO)

glycine binding (IEA,ISO)

identical protein binding (ISO)

ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (IEA)

metal ion binding (IEA)

monoatomic ion channel activity (IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

taurine binding (IEA)

transmembrane signaling receptor activity (IEA)

transmitter-gated monoatomic ion channel activity (IEA)

transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Inhibitory synaptic transmission pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Glra1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	112,367,383 - 112,460,891 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	10,817,422 - 10,896,958 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	10,816,712 - 10,896,958 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GLRA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	151,822,513 - 151,924,851 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	151,822,513 - 151,924,851 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	151,202,074 - 151,304,412 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	151,182,361 - 151,284,596 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	151,182,360 - 151,284,596	NCBI
Celera	5	147,283,467 - 147,385,844 (-)	NCBI		Celera
Cytogenetic Map	5	q33.1	NCBI
HuRef	5	146,347,483 - 146,449,349 (-)	NCBI		HuRef
CHM1_1	5	150,634,496 - 150,736,836 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	152,361,497 - 152,463,867 (-)	NCBI		T2T-CHM13v2.0

Glra1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	55,405,065 - 55,499,024 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	55,405,064 - 55,499,024 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	55,514,239 - 55,608,198 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	55,514,238 - 55,608,198 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	55,328,315 - 55,421,292 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	55,358,236 - 55,451,213 (-)	NCBI		MGSCv36	mm8
Celera	11	60,300,816 - 60,360,053 (-)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	33.12	NCBI

Glra1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	40,128,284 - 40,228,612 (-)	NCBI		GRCr8
mRatBN7.2	10	39,625,853 - 39,727,897 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,629,459 - 39,727,162 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	44,313,228 - 44,411,116 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,803,339 - 43,901,228 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	39,307,010 - 39,404,890 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,851,955 - 40,954,364 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,855,559 - 40,953,651 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	40,687,069 - 40,785,100 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	40,922,867 - 41,021,767 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	40,936,489 - 41,035,390 (-)	NCBI
Celera	10	38,958,969 - 39,055,009 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Glra1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	6,236,092 - 6,333,166 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	6,236,092 - 6,333,166 (-)	NCBI	ChiLan1.0	ChiLan1.0

GLRA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	147,050,625 - 147,153,444 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	145,190,265 - 145,292,989 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	147,245,741 - 147,348,555 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	153,248,488 - 153,350,573 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	153,248,488 - 153,350,567 (-)	Ensembl	panpan1.1		panPan2

GLRA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	57,443,094 - 57,541,494 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	57,443,999 - 57,528,376 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	57,296,776 - 57,348,297 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	57,919,593 - 57,971,180 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	57,885,421 - 57,971,013 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	57,735,798 - 57,787,335 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	57,834,258 - 57,885,784 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	58,337,576 - 58,389,066 (+)	NCBI		UU_Cfam_GSD_1.0

GLRA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	71,142,198 - 71,230,344 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	71,140,751 - 71,236,867 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	77,317,685 - 77,407,159 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GLRA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	54,384,452 - 54,485,957 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	54,387,229 - 54,484,372 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	23,216,388 - 23,318,088 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Glra1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	37,153,863 - 37,235,485 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	37,153,348 - 37,238,201 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005325472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005325473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000015948 ⟹ ENSSTOP00000014269

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936515	10,817,422 - 10,896,958 (+)	Ensembl

RefSeq Acc Id:

XM_005325472 ⟹ XP_005325529

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	112,367,383 - 112,460,891 (+)	NCBI
SpeTri2.0	NW_004936515	10,816,712 - 10,896,958 (+)	NCBI

Sequence:

show sequence

AACACCTCGAGTGGGAGGGTTTGAAGATACTAAGGAGTTTTCCCCCCTTTTCTTTCCCCTCTCC
ACCCCCTCCTATCGGCCATCGCCCCCTGCCCGCCCCTTCATCCACTACCCCGTCAGTTTGTTAA
ATTAATGCAGTAAGAAAGTCTGAAGATCTGGAGGAGTCCTGGCCAAAGGAAGATGGGCGAGCCC
AGAGAACCGCGATGCATCTGAAACCCTGGGCTCCTGAGCCCCTCGGGGTAGCCATGGACCCTAG
CAGCCCCTGAAACTTGCCCTGGGCTCTCTCCCGCCTGCAATCCTAAGCAATGGGACACCTTTCC
TTCAGCGATCATAACTTATTCGGCGGGGACCAGAGAACAGGGATTGCACAGCGACAGCAGACCG
GAACGGAGACAGGGAAGCAAGATTCTGGGACTCCGTCGCGATGCGCCAGCCTGGCACACTCTGC
GAGATTTAACTGAAGGCTGCGCCGTCCACCGCTTTCCCCTTGCCCCTGACCCCCTCAGGCCAGT
CCAGAGCCATCAAGCCTTGCTGCGTCTACCCAAGATGCTCGCCCAATCTAAAGGTCCGCGGCCA
GCCCTCTGATCTCCACAGAAGAATTTTGCCCTTTCACGGAGCTGGCCGTTTAAACAGAAAAACA
GGGGTAAAAAAAAAAAAGAAAAAGAAAATATACCCACCCCCAAACGTGCCTCCCCAGCGCCGCA
GGGAGCCAACAGACACGCTGGAGTTTAACAAACAGCAATACTCTTCGCGCTCCTGAAAAGCGGG
GCTGGACGCTCTCCGTGGTGCTGAAACGCTACGCGGCCGCCGCTGTCCGTGGTACCTACAGCCT
CCTCGCTCCAATTTCCCCTGAGGCTCTCTCTCCGCACCCCTATTCCTCACCTCCCCTTAACATC
TGGATTATTTTTCCAATAGCTCTCGCTGGTTTTGTAAGTGCCAATTTGAAACATTTTTTTGCCC
CCGTAACTCGTGGACTACAAAGCACAAGGAACTGAAAAATGTACAGCTTCAATACTCTTCGACT
CTACCTTTGGGAGACCATTGTATTCTTCAGCCTTGCTGCTTCTAAGGAGGCTGAAGCTGCCCGC
TCTGCGCCCAAGCCGATGTCACCCTCGGATTTCCTGGATAAGCTGATGGGCAGAACTTCTGGAT
ATGATGCCAGGATCAGGCCCAATTTTAAAGGTCCTCCCGTGAACGTGAGCTGCAACATTTTCAT
CAACAGCTTCGGATCCATTGCTGAGACGACCATGGACTATAGGGTCAACATCTTTCTGCGGCAA
CAGTGGAACGACCCCCGTCTGGCCTATAATGAATACCCCGATGACTCTCTGGACCTGGACCCAT
CCATGCTGGATTCCATCTGGAAACCTGACCTGTTCTTTGCCAACGAGAAGGGGGCCCACTTCCA
TGAGATCACCACAGACAACAAACTGCTGAGAATCTCCCGGAATGGCAATGTCCTCTACAGCATC
AGAATCACTCTGACACTGGCCTGCCCCATGGACTTGAAGAATTTCCCCATGGATGTCCAGACCT
GTATCATGCAACTGGAAAGCTTTGGATACACCATGAATGACCTCATCTTTGAGTGGCAGGAGCA
AGGAGCTGTACAGGTGGCAGATGGACTAACCCTGCCCCAGTTTATCCTGAAGGAAGAGAAGGAC
TTGAGATATTGCACCAAGCATTACAACACAGGTAAATTCACCTGTATTGAGGCCCGGTTCCATT
TGGAGCGGCAGATGGGCTATTACCTGATCCAGATGTATATTCCAAGCCTGCTCATCGTCATCCT
CTCATGGATTTCCTTTTGGATAAACATGGATGCAGCACCAGCCCGTGTGGGCCTGGGCATCACC
ACTGTGCTCACCATGACCACTCAGAGCTCTGGCTCCAGAGCATCCCTGCCCAAGGTATCCTACG
TGAAAGCCATTGACATTTGGATGGCAGTTTGCCTGCTCTTCGTGTTCTCAGCCCTGCTAGAGTA
TGCCGCTGTCAACTTTGTTTCTCGGCAACACAAAGAGCTGCTCCGATTCAGGAGGAAGCGGAGA
CATCACAAGAGCCCCATGTTGAATCTGTTCCAGGAGGATGAGGCAGGAGAGGGCCGTTTCAACT
TTGCCTATGGCATGGGCCCAGCCTGCCTGCAGGGCAAGGATGGCATTTCGGTCAAAGGCGCCAA
CAACAACAACACCACCAACCCGCCTCCCGCACCATCCAAGTCCCCGGAGGAGATGCGAAAACTC
TTCATCCAGAGAGCCAAGAAGATTGACAAAATATCCCGCATTGGCTTCCCCATGGCCTTCCTCA
TCTTCAACATGTTCTATTGGATCATCTACAAGATTGTCCGCAGAGAGGACGTCCACAACCAGTG
AAGGGCTGGGATGTGGGGGGATGCTGGGGGAGGCTGGGACAGGGCAGTGGGGAAGCGCACAGGA
ATCTGGGAGGCTAAGGAAGAGAGGGGAAGAGGGAGGGGCACATACACAACTCTTGTCTCCCTCT
CTCTCTCTGCAATATGTGCAATAGCAAAATGCACTAATGCATGAATT

hide sequence

RefSeq Acc Id:

XM_005325473 ⟹ XP_005325530

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	112,367,393 - 112,447,612 (+)	NCBI
SpeTri2.0	NW_004936515	10,816,712 - 10,896,958 (+)	NCBI

Sequence:

show sequence

AACACCTCGAGTGGGAGGGTTTGAAGATACTAAGGAGTTTTCCCCCCTTTTCTTTCCCCTCTCC
ACCCCCTCCTATCGGCCATCGCCCCCTGCCCGCCCCTTCATCCACTACCCCGTCAGTTTGTTAA
ATTAATGCAGTAAGAAAGTCTGAAGATCTGGAGGAGTCCTGGCCAAAGGAAGATGGGCGAGCCC
AGAGAACCGCGATGCATCTGAAACCCTGGGCTCCTGAGCCCCTCGGGGTAGCCATGGACCCTAG
CAGCCCCTGAAACTTGCCCTGGGCTCTCTCCCGCCTGCAATCCTAAGCAATGGGACACCTTTCC
TTCAGCGATCATAACTTATTCGGCGGGGACCAGAGAACAGGGATTGCACAGCGACAGCAGACCG
GAACGGAGACAGGGAAGCAAGATTCTGGGACTCCGTCGCGATGCGCCAGCCTGGCACACTCTGC
GAGATTTAACTGAAGGCTGCGCCGTCCACCGCTTTCCCCTTGCCCCTGACCCCCTCAGGCCAGT
CCAGAGCCATCAAGCCTTGCTGCGTCTACCCAAGATGCTCGCCCAATCTAAAGGTCCGCGGCCA
GCCCTCTGATCTCCACAGAAGAATTTTGCCCTTTCACGGAGCTGGCCGTTTAAACAGAAAAACA
GGGGTAAAAAAAAAAAAGAAAAAGAAAATATACCCACCCCCAAACGTGCCTCCCCAGCGCCGCA
GGGAGCCAACAGACACGCTGGAGTTTAACAAACAGCAATACTCTTCGCGCTCCTGAAAAGCGGG
GCTGGACGCTCTCCGTGGTGCTGAAACGCTACGCGGCCGCCGCTGTCCGTGGTACCTACAGCCT
CCTCGCTCCAATTTCCCCTGAGGCTCTCTCTCCGCACCCCTATTCCTCACCTCCCCTTAACATC
TGGATTATTTTTCCAATAGCTCTCGCTGGTTTTGTAAGTGCCAATTTGAAACATTTTTTTGCCC
CCGTAACTCGTGGACTACAAAGCACAAGGAACTGAAAAATGTACAGCTTCAATACTCTTCGACT
CTACCTTTGGGAGACCATTGTATTCTTCAGCCTTGCTGCTTCTAAGGAGGCTGAAGCTGCCCGC
TCTGCGCCCAAGCCGATGTCACCCTCGGATTTCCTGGATAAGCTGATGGGCAGAACTTCTGGAT
ATGATGCCAGGATCAGGCCCAATTTTAAAGGTCCTCCCGTGAACGTGAGCTGCAACATTTTCAT
CAACAGCTTCGGATCCATTGCTGAGACGACCATGGACTATAGGGTCAACATCTTTCTGCGGCAA
CAGTGGAACGACCCCCGTCTGGCCTATAATGAATACCCCGATGACTCTCTGGACCTGGACCCAT
CCATGCTGGATTCCATCTGGAAACCTGACCTGTTCTTTGCCAACGAGAAGGGGGCCCACTTCCA
TGAGATCACCACAGACAACAAACTGCTGAGAATCTCCCGGAATGGCAATGTCCTCTACAGCATC
AGAATCACTCTGACACTGGCCTGCCCCATGGACTTGAAGAATTTCCCCATGGATGTCCAGACCT
GTATCATGCAACTGGAAAGCTTTGGATACACCATGAATGACCTCATCTTTGAGTGGCAGGAGCA
AGGAGCTGTACAGGTGGCAGATGGACTAACCCTGCCCCAGTTTATCCTGAAGGAAGAGAAGGAC
TTGAGATATTGCACCAAGCATTACAACACAGGTAAATTCACCTGTATTGAGGCCCGGTTCCATT
TGGAGCGGCAGATGGGCTATTACCTGATCCAGATGTATATTCCAAGCCTGCTCATCGTCATCCT
CTCATGGATTTCCTTTTGGATAAACATGGATGCAGCACCAGCCCGTGTGGGCCTGGGCATCACC
ACTGTGCTCACCATGACCACTCAGAGCTCTGGCTCCAGAGCATCCCTGCCCAAGGTATCCTACG
TGAAAGCCATTGACATTTGGATGGCAGTTTGCCTGCTCTTCGTGTTCTCAGCCCTGCTAGAGTA
TGCCGCTGTCAACTTTGTTTCTCGGCAACACAAAGAGCTGCTCCGATTCAGGAGGAAGCGGAGA
CATCACAAGGAGGATGAGGCAGGAGAGGGCCGTTTCAACTTTGCCTATGGCATGGGCCCAGCCT
GCCTGCAGGGCAAGGATGGCATTTCGGTCAAAGGCGCCAACAACAACAACACCACCAACCCGCC
TCCCGCACCATCCAAGTCCCCGGAGGAGATGCGAAAACTCTTCATCCAGAGAGCCAAGAAGATT
GACAAAATATCCCGCATTGGCTTCCCCATGGCCTTCCTCATCTTCAACATGTTCTATTGGATCA
TCTACAAGATTGTCCGCAGAGAGGACGTCCACAACCAGTGAAGGGCTGGGATGTGGGGGGATGC
TGGGGGAGGCTGGGACAGGGCAGTGGGGAAGCGCACAGGAATCTGGGAGGCTAAGGAAGAGAGG
GGAAGAGGGAGGGGCACATACACAACTCTTGTCTCCCTCTCTCTCTCTGCAATATGTGCAATAG
CAAAATGCACTAATGCATGAATT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005325529	(Get FASTA)	NCBI Sequence Viewer
	XP_005325530	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014269.3
GenBank Protein	KAG3265432	(Get FASTA)	NCBI Sequence Viewer
	KAG3265433	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005325530 ⟸ XM_005325473

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYSFNTLRLYLWETIVFFSLAASKEAEAARSAPKPMSPSDFLDKLMGRTSGYDARIRPNFKGPP
VNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFF
ANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMN
DLIFEWQEQGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMY
IPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLL
FVFSALLEYAAVNFVSRQHKELLRFRRKRRHHKEDEAGEGRFNFAYGMGPACLQGKDGISVKGA
NNNNTTNPPPAPSKSPEEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIYKIVRREDVHNQ

hide sequence

RefSeq Acc Id:	XP_005325529 ⟸ XM_005325472
- Peptide Label:	isoform X1
- UniProtKB:	I3MQM4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYSFNTLRLYLWETIVFFSLAASKEAEAARSAPKPMSPSDFLDKLMGRTSGYDARIRPNFKGPP VNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFF ANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMN DLIFEWQEQGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMY IPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLL FVFSALLEYAAVNFVSRQHKELLRFRRKRRHHKSPMLNLFQEDEAGEGRFNFAYGMGPACLQGK DGISVKGANNNNTTNPPPAPSKSPEEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIYKIV RREDVHNQ hide sequence

RefSeq Acc Id:

ENSSTOP00000014269 ⟸ ENSSTOT00000015948

Protein Domains

Neurotransmitter-gated ion-channel ligand-binding Neurotransmitter-gated ion-channel transmembrane

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000015938	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000015948.3	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.390	UniProtKB/TrEMBL
	2.70.170.10	UniProtKB/TrEMBL
InterPro	GABAA/Glycine_rcpt	UniProtKB/TrEMBL
	Glycine_rcpt_A	UniProtKB/TrEMBL
	Glycine_rcpt_A1	UniProtKB/TrEMBL
	Neur_chan_lig-bd	UniProtKB/TrEMBL
	Neur_chan_lig-bd_sf	UniProtKB/TrEMBL
	Neur_channel	UniProtKB/TrEMBL
	Neuro-gated_channel_TM_sf	UniProtKB/TrEMBL
	Neuro_actylchol_rec	UniProtKB/TrEMBL
	Neurotrans-gated_channel_TM	UniProtKB/TrEMBL
	Neurotransmitter_ion_chnl_CS	UniProtKB/TrEMBL
NCBI Gene	Glra1	ENTREZGENE
PANTHER	GLYCINE RECEPTOR SUBUNIT ALPHA-1	UniProtKB/TrEMBL
	PTHR18945	UniProtKB/TrEMBL
Pfam	Neur_chan_LBD	UniProtKB/TrEMBL
	Neur_chan_memb	UniProtKB/TrEMBL
PRINTS	GABAARECEPTR	UniProtKB/TrEMBL
	GLYRALPHA	UniProtKB/TrEMBL
	GLYRALPHA1	UniProtKB/TrEMBL
	NRIONCHANNEL	UniProtKB/TrEMBL
PROSITE	NEUROTR_ION_CHANNEL	UniProtKB/TrEMBL
Superfamily-SCOP	SSF63712	UniProtKB/TrEMBL
	SSF90112	UniProtKB/TrEMBL
UniProt	I3MQM4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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