Clec4g (C-type lectin domain family 4 member G) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Clec4g (C-type lectin domain family 4 member G) Ictidomys tridecemlineatus
Analyze
Symbol: Clec4g
Name: C-type lectin domain family 4 member G
RGD ID: 12532069
Description: ENCODES a protein that exhibits carbohydrate derivative binding (ortholog); fructose binding (ortholog); mannose binding (ortholog); INVOLVED IN negative regulation of T cell mediated immunity (ortholog); negative regulation of T cell proliferation (ortholog); positive regulation of viral life cycle (ortholog); ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN integral component of plasma membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,094,033 - 213,097,594 (+)NCBI
SpeTri2.0NW_0049365884,737,278 - 4,740,750 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Clec4g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,094,033 - 213,097,594 (+)NCBI
SpeTri2.0NW_0049365884,737,278 - 4,740,750 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC4G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl197,728,958 - 7,733,906 (-)EnsemblGRCh38hg38GRCh38
GRCh38197,728,957 - 7,732,110 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37197,793,843 - 7,797,057 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,699,850 - 7,703,005 (-)NCBINCBI36hg18NCBI36
Build 34197,699,851 - 7,703,006NCBI
Celera197,664,968 - 7,668,182 (-)NCBI
Cytogenetic Map19p13.2NCBI
HuRef197,463,587 - 7,466,801 (-)NCBIHuRef
CHM1_1197,793,562 - 7,796,776 (-)NCBICHM1_1
Clec4g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,757,066 - 3,770,695 (-)NCBIGRCm39mm39
GRCm39 Ensembl83,757,064 - 3,770,651 (-)Ensembl
GRCm3883,707,066 - 3,720,695 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,707,064 - 3,720,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv3783,716,071 - 3,720,651 (-)NCBIGRCm37mm9NCBIm37
MGSCv3683,716,077 - 3,720,651 (-)NCBImm8
Celera83,946,232 - 3,950,812 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
Clec4g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2121,780,370 - 1,785,027 (-)NCBI
Rnor_6.0 Ensembl122,273,941 - 2,277,169 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0122,273,649 - 2,278,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0124,434,464 - 4,439,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,412,875 - 2,416,940 (+)NCBIRGSC3.4rn4RGSC3.4
Celera123,635,478 - 3,641,645 (-)NCBICelera
Cytogenetic Map12p12NCBI
Clec4g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,571,288 - 1,575,979 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,571,374 - 1,574,901 (+)NCBIChiLan1.0ChiLan1.0
CLEC4G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1197,870,550 - 7,873,699 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,870,730 - 7,873,631 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0197,015,848 - 7,019,396 (-)NCBIMhudiblu_PPA_v0panPan3
CLEC4G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,476,162 - 52,480,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,476,200 - 52,479,930 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,279,523 - 52,283,613 (-)NCBI
ROS_Cfam_1.02053,005,016 - 53,009,106 (-)NCBI
UMICH_Zoey_3.12052,208,486 - 52,218,901 (-)NCBI
UNSW_CanFamBas_1.02052,652,069 - 52,656,165 (-)NCBI
UU_Cfam_GSD_1.02052,883,279 - 52,887,375 (-)NCBI
CLEC4G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1271,433,406 - 71,436,570 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,967,726 - 71,970,446 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233812
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,206,303 - 7,211,213 (-)NCBI
ChlSab1.1 Ensembl67,206,712 - 7,209,431 (-)Ensembl
Vero_WHO_p1.0NW_023666081636,814 - 640,084 (+)NCBI
Clec4g
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624828775,114 - 778,526 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005332121   ⟹   XP_005332178
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118213,094,033 - 213,097,594 (+)NCBI
SpeTri2.0NW_0049365884,737,278 - 4,740,750 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332178 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3280543 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005332178   ⟸   XM_005332121
- Sequence:
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000832 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000000744 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000830 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene Clec4g ENTREZGENE
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt I3LXF1_ICTTR UniProtKB/TrEMBL