Nab2 (NGFI-A binding protein 2) - Rat Genome Database

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Gene: Nab2 (NGFI-A binding protein 2) Ictidomys tridecemlineatus
Analyze
Symbol: Nab2
Name: NGFI-A binding protein 2
RGD ID: 12531232
Description: ENCODES a protein that exhibits identical protein binding (inferred); transcription coregulator activity (inferred); INVOLVED IN endochondral ossification (ortholog); myelination (ortholog); negative regulation of transcription by RNA polymerase III (ortholog); ASSOCIATED WITH genetic disease (ortholog); Solitary Fibrous Tumors (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NGFI-A binding protein 2, transcript variant X1; NGFI-A binding protein 2, transcript variant X2; NGFI-A-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,572,772 - 57,579,031 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,291,446 - 1,299,118 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,291,251 - 1,297,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nab2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,572,772 - 57,579,031 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,291,446 - 1,299,118 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,291,251 - 1,297,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,089,114 - 57,095,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,089,043 - 57,095,476 (+)EnsemblGRCh38hg38GRCh38
GRCh371257,482,897 - 57,489,259 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,768,944 - 55,775,526 (+)NCBINCBI36Build 36hg18NCBI36
Build 341255,769,156 - 55,775,525NCBI
Celera1257,136,605 - 57,143,187 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,521,179 - 54,527,665 (+)NCBIHuRef
CHM1_11257,450,361 - 57,456,943 (+)NCBICHM1_1
T2T-CHM13v2.01257,056,986 - 57,063,348 (+)NCBIT2T-CHM13v2.0
Nab2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,496,787 - 127,502,572 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,496,787 - 127,504,437 (-)EnsemblGRCm39 Ensembl
GRCm3810127,660,918 - 127,666,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,660,918 - 127,668,568 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710127,097,974 - 127,103,759 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,063,868 - 127,069,627 (-)NCBIMGSCv36mm8
Celera10130,053,279 - 130,059,070 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.6NCBI
Nab2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,382,863 - 65,389,527 (-)NCBIGRCr8
mRatBN7.2763,497,589 - 63,504,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,497,589 - 63,503,989 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,386,837 - 65,393,229 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,589,127 - 67,595,520 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,390,417 - 67,396,822 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,963,580 - 70,971,471 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,961,575 - 70,969,905 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,135,886 - 71,143,765 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,642,321 - 67,648,713 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,663,919 - 67,669,962 (-)NCBI
Celera760,637,039 - 60,643,441 (-)NCBICelera
Cytogenetic Map7q22NCBI
Nab2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,826,458 - 4,832,487 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,826,464 - 4,832,487 (+)NCBIChiLan1.0ChiLan1.0
NAB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,246,556 - 37,253,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,243,326 - 37,249,885 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1232,085,031 - 32,091,498 (-)Ensemblpanpan1.1panPan2
NAB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,226,626 - 1,232,575 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,226,415 - 1,231,810 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,290,586 - 1,296,444 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,237,205 - 1,243,063 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,237,142 - 1,243,073 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,213,906 - 1,219,764 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,455,916 - 1,461,773 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,580,762 - 1,586,620 (+)NCBIUU_Cfam_GSD_1.0
NAB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,400,277 - 22,406,419 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,400,275 - 22,406,424 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,221,637 - 24,227,800 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,998,467 - 53,005,053 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,000,822 - 53,004,296 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,967,401 - 192,973,985 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nab2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,847,394 - 10,852,963 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,847,728 - 10,852,002 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000025735   ⟹   ENSSTOP00000014858
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,291,446 - 1,299,118 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000035754   ⟹   ENSSTOP00000025383
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,291,446 - 1,299,118 (+)Ensembl
RefSeq Acc Id: XM_005335658   ⟹   XP_005335715
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,572,772 - 57,579,027 (-)NCBI
SpeTri2.0NW_0049366461,291,251 - 1,297,463 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021733514   ⟹   XP_021589189
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,572,772 - 57,579,031 (-)NCBI
SpeTri2.0NW_0049366461,291,251 - 1,297,463 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005335715 (Get FASTA)   NCBI Sequence Viewer  
  XP_021589189 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014858.1
  ENSSTOP00000025383.1
GenBank Protein KAG3291570 (Get FASTA)   NCBI Sequence Viewer  
  KAG3291571 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005335715   ⟸   XM_005335658
- Peptide Label: isoform X1
- UniProtKB: I3MRW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589189   ⟸   XM_021733514
- Peptide Label: isoform X2
- UniProtKB: A0A287CVT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000025383   ⟸   ENSSTOT00000035754
RefSeq Acc Id: ENSSTOP00000014858   ⟸   ENSSTOT00000025735
Protein Domains
NAB co-repressor   Nab N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020459 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025735.2 UniProtKB/TrEMBL
  ENSSTOT00000035754.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  1.20.120.2010 UniProtKB/TrEMBL
InterPro NAB_co-repressor_dom UniProtKB/TrEMBL
  NAB_fam UniProtKB/TrEMBL
  Nab_N UniProtKB/TrEMBL
  NCD2_sf UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
NCBI Gene Nab2 ENTREZGENE
PANTHER NGFI-A-BINDING PROTEIN 2 UniProtKB/TrEMBL
  PTHR12623 UniProtKB/TrEMBL
Pfam NCD1 UniProtKB/TrEMBL
  NCD2 UniProtKB/TrEMBL
UniProt A0A287CVT8 ENTREZGENE, UniProtKB/TrEMBL
  I3MRW3 ENTREZGENE, UniProtKB/TrEMBL