Epha8 (EPH receptor A8) - Rat Genome Database

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Gene: Epha8 (EPH receptor A8) Ictidomys tridecemlineatus
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Symbol: Epha8
Name: EPH receptor A8
RGD ID: 12530086
Description: ENCODES a protein that exhibits ATP binding (inferred); ephrin receptor activity (inferred); GPI-linked ephrin receptor activity (inferred); INVOLVED IN cellular response to follicle-stimulating hormone stimulus (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); genetic disease (ortholog); FOUND IN dendrite (inferred); membrane (inferred); neuron projection (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ephrin type-A receptor 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,131,740 - 42,157,180 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364747,928,700 - 7,981,962 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364747,928,700 - 7,981,961 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Epha8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,131,740 - 42,157,180 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364747,928,700 - 7,981,962 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364747,928,700 - 7,981,961 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38122,563,489 - 22,603,595 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl122,563,489 - 22,603,595 (+)EnsemblGRCh38hg38GRCh38
GRCh37122,889,982 - 22,930,088 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,762,591 - 22,802,674 (+)NCBINCBI36Build 36hg18NCBI36
Build 34122,635,309 - 22,675,393NCBI
Celera121,213,404 - 21,254,789 (+)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,133,248 - 21,174,608 (+)NCBIHuRef
CHM1_1123,008,057 - 23,042,609 (+)NCBICHM1_1
T2T-CHM13v2.0122,387,196 - 22,428,607 (+)NCBIT2T-CHM13v2.0
Epha8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,656,729 - 136,684,170 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,656,730 - 136,684,127 (-)EnsemblGRCm39 Ensembl
GRCm384136,929,419 - 136,956,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,929,419 - 136,956,816 (-)EnsemblGRCm38mm10GRCm38
MGSCv374136,485,334 - 136,512,731 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364136,201,495 - 136,228,894 (-)NCBIMGSCv36mm8
Celera4135,136,846 - 135,164,245 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map469.05NCBI
Epha8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85154,449,566 - 154,476,966 (-)NCBIGRCr8
mRatBN7.25149,166,107 - 149,193,515 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5149,166,697 - 149,193,399 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05155,293,731 - 155,321,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5155,295,314 - 155,316,495 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05159,055,846 - 159,085,645 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,696,393 - 155,717,598 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15155,706,431 - 155,709,122 (-)NCBI
Celera5147,563,833 - 147,590,905 (-)NCBICelera
Cytogenetic Map5q36NCBI
Epha8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554522,701,803 - 2,729,277 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554522,702,277 - 2,729,161 (+)NCBIChiLan1.0ChiLan1.0
EPHA8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21204,340,369 - 204,386,161 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11203,443,413 - 203,489,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,746,846 - 21,792,635 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1122,700,852 - 22,735,944 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl122,700,512 - 22,735,944 (+)Ensemblpanpan1.1panPan2
EPHA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,703,538 - 76,739,327 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,703,524 - 76,739,259 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,208,442 - 73,244,029 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0277,264,217 - 77,298,257 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl277,262,555 - 77,293,354 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,083,641 - 74,119,220 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,091,930 - 75,127,511 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0276,095,721 - 76,131,311 (-)NCBIUU_Cfam_GSD_1.0
EPHA8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,516,967 - 80,550,588 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,516,967 - 80,548,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,545,330 - 74,579,144 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPHA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120110,061,871 - 110,095,354 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20110,063,727 - 110,101,072 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660336,215,437 - 6,253,423 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epha8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247647,307,967 - 7,339,169 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247647,307,967 - 7,339,187 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000008928   ⟹   ENSSTOP00000008001
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364747,955,972 - 7,980,257 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000034902   ⟹   ENSSTOP00000029794
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364747,928,700 - 7,981,962 (+)Ensembl
RefSeq Acc Id: XM_040288081   ⟹   XP_040144015
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505842,131,976 - 42,157,180 (+)NCBI
RefSeq Acc Id: XM_040288082   ⟹   XP_040144016
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505842,131,976 - 42,157,180 (+)NCBI
RefSeq Acc Id: XM_040288083   ⟹   XP_040144017
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505842,131,740 - 42,157,180 (+)NCBI
RefSeq Acc Id: XM_040288084   ⟹   XP_040144018
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505842,131,740 - 42,157,180 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040144015 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144016 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144017 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144018 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008001.3
  ENSSTOP00000029794.1
GenBank Protein KAG3282371 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040144017   ⟸   XM_040288083
- Peptide Label: isoform X3
- UniProtKB: I3MCK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144018   ⟸   XM_040288084
- Peptide Label: isoform X4
- UniProtKB: I3MCK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144016   ⟸   XM_040288082
- Peptide Label: isoform X2
- UniProtKB: I3MCK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144015   ⟸   XM_040288081
- Peptide Label: isoform X1
- UniProtKB: I3MCK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000029794   ⟸   ENSSTOT00000034902
RefSeq Acc Id: ENSSTOP00000008001   ⟸   ENSSTOT00000008928
Protein Domains
Eph LBD   Fibronectin type-III   Protein kinase   SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008929 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008928.3 UniProtKB/TrEMBL
  ENSSTOT00000034902.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ephrin a2 ectodomain UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro Eph_TM UniProtKB/TrEMBL
  Ephrin_rcpt_lig-bd_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_ephrin_rcpt UniProtKB/TrEMBL
  Tyr_kinase_rcpt_V_CS UniProtKB/TrEMBL
NCBI Gene Epha8 ENTREZGENE
PANTHER EPH RECEPTOR A5 UniProtKB/TrEMBL
  EPHRIN TYPE-A RECEPTOR 8 UniProtKB/TrEMBL
Pfam EphA2_TM UniProtKB/TrEMBL
  Ephrin_lbd UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
PIRSF TyrPK_ephrin_receptor UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
  TYRKINASE UniProtKB/TrEMBL
PROSITE EPH_LBD UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_1 UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_2 UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
SMART EPH_lbd UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A287D8D7_ICTTR UniProtKB/TrEMBL
  I3MCK9 ENTREZGENE, UniProtKB/TrEMBL