Emx2 (empty spiracles homeobox 2) - Rat Genome Database

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Gene: Emx2 (empty spiracles homeobox 2) Ictidomys tridecemlineatus
Analyze
Symbol: Emx2
Name: empty spiracles homeobox 2
RGD ID: 12529961
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); brain development (ortholog); cell proliferation in forebrain (ortholog); ASSOCIATED WITH colorectal adenocarcinoma (ortholog); colorectal cancer (ortholog); epilepsy (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: empty spiracles homeobox 2, transcript variant X1; empty spiracles homeobox 2, transcript variant X2; homeobox protein EMX2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721318,241,303 - 18,247,914 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364867,313,190 - 7,319,995 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364867,313,689 - 7,319,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Emx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721318,241,303 - 18,247,914 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364867,313,190 - 7,319,995 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364867,313,689 - 7,319,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810117,542,746 - 117,549,546 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10117,542,445 - 117,549,546 (+)EnsemblGRCh38hg38GRCh38
GRCh3710119,302,257 - 119,309,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610119,291,946 - 119,299,043 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410119,291,945 - 119,299,043NCBI
Celera10113,031,949 - 113,039,046 (+)NCBICelera
Cytogenetic Map10q26.11NCBI
HuRef10112,930,193 - 112,937,289 (+)NCBIHuRef
CHM1_110119,586,078 - 119,593,194 (+)NCBICHM1_1
T2T-CHM13v2.010118,437,136 - 118,443,925 (+)NCBIT2T-CHM13v2.0
Emx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391959,447,122 - 59,453,789 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1959,446,804 - 59,453,789 (+)EnsemblGRCm39 Ensembl
GRCm381959,458,690 - 59,465,357 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1959,458,372 - 59,465,357 (+)EnsemblGRCm38mm10GRCm38
MGSCv371959,533,180 - 59,539,847 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361959,511,622 - 59,518,607 (+)NCBIMGSCv36mm8
Celera1961,658,178 - 61,664,837 (+)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.28NCBI
Emx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81268,612,663 - 268,619,671 (+)NCBIGRCr8
mRatBN7.21258,626,584 - 258,633,594 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1258,626,584 - 258,633,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1266,832,393 - 266,839,395 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01273,538,418 - 273,545,420 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01266,179,101 - 266,186,108 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01280,633,938 - 280,640,946 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1280,633,938 - 280,640,946 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01287,993,648 - 288,000,656 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41266,004,257 - 266,011,265 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1254,275,943 - 254,282,950 (+)NCBICelera
Cytogenetic Map1q55NCBI
Emx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543122,192,446 - 22,199,279 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543122,192,446 - 22,199,141 (+)NCBIChiLan1.0ChiLan1.0
EMX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28129,405,618 - 129,419,620 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110129,417,530 - 129,424,956 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010114,124,759 - 114,132,109 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110117,551,451 - 117,557,972 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10117,551,451 - 117,557,972 (+)Ensemblpanpan1.1panPan2
EMX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12828,002,966 - 28,009,955 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2828,003,710 - 28,009,035 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2828,146,341 - 28,153,333 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02828,532,618 - 28,539,604 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2828,532,897 - 28,538,743 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12828,094,345 - 28,101,342 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02828,108,855 - 28,115,187 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02828,303,055 - 28,310,050 (+)NCBIUU_Cfam_GSD_1.0
EMX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14127,650,688 - 127,655,706 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114127,649,675 - 127,656,972 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214139,052,130 - 139,055,522 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EMX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19110,347,043 - 110,353,647 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9110,347,379 - 110,353,643 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604871,602,815 - 71,610,687 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473729,103,279 - 29,110,344 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473729,103,378 - 29,110,356 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000012669   ⟹   ENSSTOP00000011353
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364867,313,706 - 7,318,590 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000040940   ⟹   ENSSTOP00000027188
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364867,313,190 - 7,319,995 (+)Ensembl
RefSeq Acc Id: XM_005320709   ⟹   XP_005320766
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721318,241,303 - 18,247,914 (-)NCBI
SpeTri2.0NW_0049364867,313,689 - 7,319,971 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005320710   ⟹   XP_005320767
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721318,242,708 - 18,247,914 (-)NCBI
SpeTri2.0NW_0049364867,313,689 - 7,318,590 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320766 (Get FASTA)   NCBI Sequence Viewer  
  XP_005320767 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011353.3
  ENSSTOP00000027188.1
GenBank Protein KAG3264002 (Get FASTA)   NCBI Sequence Viewer  
  KAG3264003 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005320766   ⟸   XM_005320709
- Peptide Label: isoform X1
- UniProtKB: A0A287D0U2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005320767   ⟸   XM_005320710
- Peptide Label: isoform X2
- UniProtKB: I3MJL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000027188   ⟸   ENSSTOT00000040940
RefSeq Acc Id: ENSSTOP00000011353   ⟸   ENSSTOT00000012669
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012675 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012669.3 UniProtKB/TrEMBL
  ENSSTOT00000040940.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  HTH_motif UniProtKB/TrEMBL
NCBI Gene Emx2 ENTREZGENE
PANTHER HOMEOBOX PROTEIN EMX-RELATED UniProtKB/TrEMBL
  HOMEOBOX PROTEIN EMX2 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
  HTHREPRESSR UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A287D0U2 ENTREZGENE, UniProtKB/TrEMBL
  I3MJL2 ENTREZGENE, UniProtKB/TrEMBL