Pld2 (phospholipase D2) - Rat Genome Database

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Gene: Pld2 (phospholipase D2) Ictidomys tridecemlineatus
Analyze
Symbol: Pld2
Name: phospholipase D2
RGD ID: 12529814
Description: ENCODES a protein that exhibits phospholipase D activity (ortholog); protein kinase C binding (ortholog); INVOLVED IN G protein-coupled receptor internalization (ortholog); neuron projection development (ortholog); phospholipid catabolic process (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; glycerophospholipid metabolic pathway; mTOR signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Myocardial Reperfusion Injury (ortholog); FOUND IN brush border membrane (ortholog); caveola (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: phospholipase D2, transcript variant X1; phospholipase D2, transcript variant X2; phospholipase D2, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,017,042 - 53,030,311 (+)NCBI
SpeTri2.0NW_0049366772,870,664 - 2,883,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Pld2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,017,042 - 53,030,311 (+)NCBI
SpeTri2.0NW_0049366772,870,664 - 2,883,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl174,807,152 - 4,823,434 (+)EnsemblGRCh38hg38GRCh38
GRCh38174,807,152 - 4,823,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37174,710,447 - 4,726,725 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,657,378 - 4,673,694 (+)NCBINCBI36hg18NCBI36
Build 34174,657,391 - 4,673,694NCBI
Celera174,725,830 - 4,742,140 (+)NCBI
Cytogenetic Map17p13.2NCBI
HuRef174,598,848 - 4,615,181 (+)NCBIHuRef
CHM1_1174,719,366 - 4,735,679 (+)NCBICHM1_1
Pld2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,430,318 - 70,448,936 (+)NCBIGRCm39mm39
GRCm39 Ensembl1170,430,890 - 70,448,936 (+)Ensembl
GRCm381170,539,492 - 70,558,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,540,064 - 70,558,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,353,666 - 70,371,612 (+)NCBIGRCm37mm9NCBIm37
MGSCv361170,356,359 - 70,374,305 (+)NCBImm8
Celera1178,088,483 - 78,106,417 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
Pld2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21055,256,326 - 55,274,192 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1055,256,359 - 55,272,808 (+)Ensembl
Rnor_6.01057,161,921 - 57,181,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,163,174 - 57,179,730 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,908,891 - 56,926,691 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,388,474 - 57,439,063 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11057,402,096 - 57,452,684 (+)NCBI
Celera1054,402,188 - 54,419,867 (+)NCBICelera
Cytogenetic Map10q24NCBI
Pld2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,239,177 - 10,250,890 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,239,177 - 10,250,516 (+)NCBIChiLan1.0ChiLan1.0
PLD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1174,843,095 - 4,858,991 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,843,217 - 4,858,425 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0174,853,919 - 4,870,254 (+)NCBIMhudiblu_PPA_v0panPan3
PLD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,755,881 - 31,767,131 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,756,433 - 31,767,066 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,895,467 - 31,907,045 (-)NCBI
ROS_Cfam_1.0531,861,137 - 31,872,703 (-)NCBI
UMICH_Zoey_3.1531,827,405 - 31,838,971 (-)NCBI
UNSW_CanFamBas_1.0531,787,088 - 31,798,653 (-)NCBI
UU_Cfam_GSD_1.0531,963,496 - 31,975,051 (-)NCBI
PLD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,073,896 - 52,087,809 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,073,913 - 52,087,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,192,761 - 54,204,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,283,248 - 4,298,034 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl164,283,521 - 4,298,632 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605917,339,077 - 17,355,649 (-)NCBIVero_WHO_p1.0
Pld2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247868,690,968 - 8,702,213 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013363812   ⟹   XP_013219266
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,017,361 - 53,030,311 (+)NCBI
SpeTri2.0NW_0049366772,870,664 - 2,883,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734611   ⟹   XP_021590286
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,017,583 - 53,030,311 (+)NCBI
SpeTri2.0NW_0049366772,870,664 - 2,883,386 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734612   ⟹   XP_021590287
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,018,479 - 53,030,311 (+)NCBI
SpeTri2.0NW_0049366772,870,664 - 2,882,421 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040269478   ⟹   XP_040125412
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,017,042 - 53,030,311 (+)NCBI
RefSeq Acc Id: XM_040269479   ⟹   XP_040125413
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,017,218 - 53,030,311 (+)NCBI
RefSeq Acc Id: XM_040269480   ⟹   XP_040125414
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,018,241 - 53,030,311 (+)NCBI
RefSeq Acc Id: XM_040269481   ⟹   XP_040125415
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,018,241 - 53,030,311 (+)NCBI
RefSeq Acc Id: XM_040269482   ⟹   XP_040125416
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,018,241 - 53,030,311 (+)NCBI
RefSeq Acc Id: XM_040269483   ⟹   XP_040125417
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,018,513 - 53,030,311 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013219266   ⟸   XM_013363812
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021590286   ⟸   XM_021734611
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021590287   ⟸   XM_021734612
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040125412   ⟸   XM_040269478
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040125413   ⟸   XM_040269479
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040125414   ⟸   XM_040269480
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040125415   ⟸   XM_040269481
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040125416   ⟸   XM_040269482
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040125417   ⟸   XM_040269483
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014880 ENTREZGENE
Ensembl Protein ENSSTOP00000013343 ENTREZGENE
NCBI Gene Pld2 ENTREZGENE