Csta (cystatin A) - Rat Genome Database

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Gene: Csta (cystatin A) Ictidomys tridecemlineatus
Analyze
Symbol: Csta
Name: cystatin A
RGD ID: 12529501
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (inferred); endopeptidase inhibitor activity (inferred); protease binding (inferred); INVOLVED IN cell-cell adhesion (inferred); keratinocyte differentiation (inferred); negative regulation of proteolysis (inferred); ASSOCIATED WITH alkaptonuria (ortholog); Disease Progression (ortholog); familial hypocalciuric hypercalcemia (ortholog); FOUND IN peptidase inhibitor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cystatin-A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602128,859,510 - 128,871,979 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,649,703 - 8,662,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,649,890 - 8,662,472 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602128,859,510 - 128,871,979 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,649,703 - 8,662,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,649,890 - 8,662,472 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383122,325,248 - 122,341,969 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3122,325,248 - 122,341,969 (+)EnsemblGRCh38hg38GRCh38
GRCh373122,044,095 - 122,060,816 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363123,526,701 - 123,543,506 (+)NCBINCBI36Build 36hg18NCBI36
Build 343123,526,772 - 123,543,201NCBI
Celera3120,453,644 - 120,470,444 (+)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3119,417,505 - 119,434,132 (+)NCBIHuRef
CHM1_13122,007,529 - 122,024,338 (+)NCBICHM1_1
T2T-CHM13v2.03125,044,823 - 125,061,527 (+)NCBIT2T-CHM13v2.0
Csta1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391635,940,316 - 35,951,559 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1635,940,316 - 35,951,611 (-)EnsemblGRCm39 Ensembl
GRCm381636,119,946 - 36,131,189 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,119,946 - 36,131,241 (-)EnsemblGRCm38mm10GRCm38
MGSCv371636,120,032 - 36,131,275 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361636,039,245 - 36,050,490 (-)NCBIMGSCv36mm8
Celera1636,603,771 - 36,614,988 (-)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1625.43NCBI
Csta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,125,813 - 78,136,818 (+)NCBIGRCr8
mRatBN7.21164,620,483 - 64,631,488 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,620,483 - 64,631,488 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,445,448 - 73,456,477 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,107,709 - 66,118,738 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,138,957 - 65,149,986 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,555,792 - 67,566,980 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,555,658 - 67,566,972 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,643,269 - 70,654,457 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,456,248 - 66,467,253 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11166,513,871 - 66,524,843 (+)NCBI
Celera1164,089,125 - 64,100,127 (+)NCBICelera
Cytogenetic Map11q22NCBI
Csta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,617,054 - 21,630,773 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542721,617,099 - 21,630,712 (+)NCBIChiLan1.0ChiLan1.0
CSTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,272,207 - 120,288,775 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13120,277,158 - 120,293,554 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03119,417,489 - 119,432,244 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13126,323,901 - 126,338,133 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3126,323,901 - 126,338,430 (+)Ensemblpanpan1.1panPan2
CSTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13325,477,789 - 25,489,123 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3325,478,055 - 25,489,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3325,502,665 - 25,513,886 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,713,544 - 25,724,803 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,713,699 - 25,724,801 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13325,510,851 - 25,522,081 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,553,550 - 25,564,806 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,111,536 - 26,122,737 (+)NCBIUU_Cfam_GSD_1.0
LOC396867
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,181,723 - 138,236,860 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113138,216,027 - 138,226,397 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213147,854,121 - 147,859,830 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSTA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12258,519,085 - 58,536,163 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2258,519,085 - 58,536,339 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041107,806,784 - 107,823,308 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624912657,774 - 671,329 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624912657,771 - 671,304 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000026014   ⟹   ENSSTOP00000019550
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365368,649,703 - 8,662,490 (+)Ensembl
RefSeq Acc Id: XM_005327661   ⟹   XP_005327718
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602128,859,510 - 128,871,979 (-)NCBI
SpeTri2.0NW_0049365368,649,890 - 8,662,472 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327718 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019550.1
GenBank Protein KAG3271346 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005327718   ⟸   XM_005327661
- UniProtKB: I3N5A4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000019550   ⟸   ENSSTOT00000026014
Protein Domains
Cystatin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028515 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026014.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro Cystatin_dom UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
  Prot_inh_cystat_CS UniProtKB/TrEMBL
  Prot_inh_stefin UniProtKB/TrEMBL
NCBI Gene Csta ENTREZGENE
PANTHER CYSTATIN-A UniProtKB/TrEMBL
  PTHR11414 UniProtKB/TrEMBL
Pfam Cystatin UniProtKB/TrEMBL
PRINTS STEFINA UniProtKB/TrEMBL
PROSITE CYSTATIN UniProtKB/TrEMBL
SMART SM00043 UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt I3N5A4 ENTREZGENE, UniProtKB/TrEMBL