Fbxo42 (F-box protein 42) - Rat Genome Database

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Gene: Fbxo42 (F-box protein 42) Ictidomys tridecemlineatus
Analyze
Symbol: Fbxo42
Name: F-box protein 42
RGD ID: 12528955
Description: ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 42
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,913,546 - 37,994,035 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,738,234 - 3,818,842 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,738,332 - 3,818,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Fbxo42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,913,546 - 37,994,035 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,738,234 - 3,818,842 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,738,332 - 3,818,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,246,840 - 16,352,480 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,246,840 - 16,352,480 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,573,335 - 16,678,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,449,146 - 16,551,535 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,321,865 - 16,424,254NCBI
Celera115,056,452 - 15,158,874 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,093,755 - 15,196,329 (-)NCBIHuRef
CHM1_1116,375,153 - 16,477,623 (-)NCBICHM1_1
T2T-CHM13v2.0115,688,176 - 15,793,999 (-)NCBIT2T-CHM13v2.0
Fbxo42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,875,216 - 140,931,373 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,875,224 - 140,931,373 (+)EnsemblGRCm39 Ensembl
GRCm384141,147,922 - 141,204,062 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,147,913 - 141,204,062 (+)EnsemblGRCm38mm10GRCm38
MGSCv374140,703,837 - 140,759,977 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,420,007 - 140,476,138 (+)NCBIMGSCv36mm8
Celera4142,955,099 - 143,012,796 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map473.41NCBI
Fbxo42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,734,165 - 158,792,560 (+)NCBIGRCr8
mRatBN7.25153,451,162 - 153,509,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,451,153 - 153,506,342 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,139,864 - 156,198,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05157,913,137 - 157,971,419 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05157,902,324 - 157,960,606 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,670,662 - 159,729,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,670,662 - 159,729,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,382,899 - 163,444,733 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,005,496 - 160,061,687 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,015,781 - 160,072,342 (+)NCBI
Celera5151,815,504 - 151,870,636 (+)NCBICelera
Cytogenetic Map5q36NCBI
Fbxo42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555271,967,232 - 2,049,524 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555271,967,232 - 2,049,524 (+)NCBIChiLan1.0ChiLan1.0
FBXO42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,568,617 - 210,674,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11209,817,242 - 209,923,531 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,383,505 - 15,489,800 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,375,319 - 16,481,012 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,375,319 - 16,481,012 (-)Ensemblpanpan1.1panPan2
FBXO42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,358,204 - 81,460,603 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,358,212 - 81,456,916 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,894,110 - 77,996,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,003,981 - 82,105,114 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,003,974 - 82,106,745 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,756,902 - 78,858,094 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,773,947 - 79,876,973 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,842,557 - 80,943,172 (+)NCBIUU_Cfam_GSD_1.0
FBXO42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,364,450 - 75,446,085 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,365,130 - 75,446,121 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,680,295 - 69,761,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120115,971,342 - 116,056,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20115,971,369 - 116,059,285 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605419,454,277 - 19,554,377 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,368,251 - 2,466,298 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,368,251 - 2,465,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000022364   ⟹   ENSSTOP00000023027
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364743,738,234 - 3,818,842 (-)Ensembl
RefSeq Acc Id: XM_005317499   ⟹   XP_005317556
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505837,913,546 - 37,994,035 (-)NCBI
SpeTri2.0NW_0049364743,738,332 - 3,818,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013362891   ⟹   XP_013218345
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505837,913,546 - 37,994,035 (-)NCBI
SpeTri2.0NW_0049364743,738,332 - 3,818,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287976   ⟹   XP_040143910
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505837,913,546 - 37,993,200 (-)NCBI
RefSeq Acc Id: XM_040287977   ⟹   XP_040143911
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505837,913,546 - 37,991,733 (-)NCBI
RefSeq Acc Id: XM_040287978   ⟹   XP_040143912
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505837,913,546 - 37,993,356 (-)NCBI
RefSeq Acc Id: XM_040287979   ⟹   XP_040143913
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505837,913,546 - 37,963,060 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005317556   ⟸   XM_005317499
- Peptide Label: isoform X3
- UniProtKB: I3NF80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013218345   ⟸   XM_013362891
- Peptide Label: isoform X3
- UniProtKB: I3NF80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143912   ⟸   XM_040287978
- Peptide Label: isoform X3
- UniProtKB: I3NF80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143910   ⟸   XM_040287976
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143911   ⟸   XM_040287977
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040143913   ⟸   XM_040287979
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000023027   ⟸   ENSSTOT00000022364
Protein Domains
F-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019820 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022364.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
NCBI Gene Fbxo42 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 42 UniProtKB/TrEMBL
  F-BOX ONLY PROTEIN 42 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  Kelch_3 UniProtKB/TrEMBL
  Kelch_5 UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt I3NF80 ENTREZGENE, UniProtKB/TrEMBL