Pax9 (paired box 9) - Rat Genome Database

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Gene: Pax9 (paired box 9) Ictidomys tridecemlineatus
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Symbol: Pax9
Name: paired box 9
RGD ID: 12528307
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); endoderm development (ortholog); face morphogenesis (ortholog); ASSOCIATED WITH anodontia (ortholog); choreatic disease (ortholog); cleft palate (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: paired box protein Pax-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864047,148,014 - 47,167,288 (+)NCBI
SpeTri2.0NW_00493649410,657,902 - 10,673,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Pax9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864047,148,014 - 47,167,288 (+)NCBI
SpeTri2.0NW_00493649410,657,902 - 10,673,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1436,657,568 - 36,679,715 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1436,657,568 - 36,679,362 (+)EnsemblGRCh38hg38GRCh38
GRCh381436,657,568 - 36,679,362 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371437,126,773 - 37,148,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361436,196,533 - 36,216,763 (+)NCBINCBI36hg18NCBI36
Build 341436,200,655 - 36,215,621NCBI
Celera1416,990,297 - 17,010,560 (+)NCBI
Cytogenetic Map14q13.3NCBI
HuRef1417,241,127 - 17,261,385 (+)NCBIHuRef
CHM1_11437,125,895 - 37,146,158 (+)NCBICHM1_1
Pax9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391256,738,478 - 56,759,609 (+)NCBIGRCm39mm39
GRCm39 Ensembl1256,738,552 - 56,759,607 (+)Ensembl
GRCm381256,691,693 - 56,712,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1256,691,767 - 56,712,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv371257,796,626 - 57,812,217 (+)NCBIGRCm37mm9NCBIm37
MGSCv361257,613,651 - 57,629,242 (+)NCBImm8
Celera1257,861,482 - 57,877,076 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.53NCBI
Pax9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2674,186,749 - 74,203,508 (+)NCBI
Rnor_6.0 Ensembl677,608,624 - 77,621,719 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0677,607,705 - 77,624,453 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0687,133,943 - 87,150,691 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4677,107,768 - 77,124,520 (+)NCBIRGSC3.4rn4RGSC3.4
Celera672,993,727 - 73,010,469 (+)NCBICelera
Cytogenetic Map6q23NCBI
Pax9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540924,424,343 - 24,444,040 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540924,401,599 - 24,443,687 (-)NCBIChiLan1.0ChiLan1.0
PAX9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11435,771,454 - 35,791,697 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1435,771,454 - 35,791,697 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01417,114,975 - 17,431,786 (+)NCBIMhudiblu_PPA_v0panPan3
PAX9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1815,221,852 - 15,239,629 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl815,221,730 - 15,239,099 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha815,017,315 - 15,039,336 (+)NCBI
ROS_Cfam_1.0815,329,659 - 15,351,686 (+)NCBI
UMICH_Zoey_3.1815,027,510 - 15,049,518 (+)NCBI
UNSW_CanFamBas_1.0815,094,578 - 15,116,598 (+)NCBI
UU_Cfam_GSD_1.0815,384,554 - 15,406,581 (+)NCBI
PAX9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl763,324,710 - 63,346,310 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1763,324,709 - 63,346,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2768,235,727 - 68,254,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PAX9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12413,454,839 - 13,470,564 (+)NCBI
ChlSab1.1 Ensembl2413,455,589 - 13,473,505 (+)Ensembl
Vero_WHO_p1.0NW_0236660532,454,784 - 2,471,998 (+)NCBI
Pax9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624838129,725 - 147,572 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005322699   ⟹   XP_005322756
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493649410,657,902 - 10,673,176 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040276508   ⟹   XP_040132442
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864047,148,014 - 47,167,288 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040132442 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005322756   ⟸   XM_005322699
- Sequence:
RefSeq Acc Id: XP_040132442   ⟸   XM_040276508
Protein Domains
Paired


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015730 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014076 UniProtKB/TrEMBL
  ENSSTOP00000031392 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015728 UniProtKB/TrEMBL
  ENSSTOT00000031415 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  PAIRED_DNA_bd_dom UniProtKB/TrEMBL
  Paired_dom UniProtKB/TrEMBL
  PAX9 UniProtKB/TrEMBL
  PAX_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Pax9 ENTREZGENE
PANTHER PTHR45636 UniProtKB/TrEMBL
  PTHR45636:SF13 UniProtKB/TrEMBL
Pfam PAX UniProtKB/TrEMBL
PRINTS PAIREDBOX UniProtKB/TrEMBL
PROSITE PAIRED_1 UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/TrEMBL
SMART PAX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A287DCV1_ICTTR UniProtKB/TrEMBL
  I3MQ90_ICTTR UniProtKB/TrEMBL