Itprid1 (ITPR interacting domain containing 1) - Rat Genome Database

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Gene: Itprid1 (ITPR interacting domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Itprid1
Name: ITPR interacting domain containing 1
RGD ID: 12527670
Description: ENCODES a protein that exhibits signaling receptor binding (inferred); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ccdc129; coiled-coil domain containing 129; coiled-coil domain-containing protein 129
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511888,514,732 - 88,596,297 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364787,726,487 - 7,807,910 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364787,726,463 - 7,807,863 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Itprid1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511888,514,732 - 88,596,297 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364787,726,487 - 7,807,910 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364787,726,463 - 7,807,863 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPRID1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38731,514,090 - 31,658,720 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl731,514,090 - 31,656,504 (+)EnsemblGRCh38hg38GRCh38
GRCh37731,553,704 - 31,698,334 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36731,523,503 - 31,659,828 (+)NCBINCBI36Build 36hg18NCBI36
Celera731,544,550 - 31,679,665 (+)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef731,435,002 - 31,579,141 (+)NCBIHuRef
CHM1_1731,553,267 - 31,697,932 (+)NCBICHM1_1
T2T-CHM13v2.0731,651,809 - 31,797,007 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2731,601,390 - 31,746,636 (+)NCBI
Itprid1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39655,782,306 - 55,955,872 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl655,813,880 - 55,955,720 (+)EnsemblGRCm39 Ensembl
GRCm38655,805,290 - 55,978,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl655,836,895 - 55,978,735 (+)EnsemblGRCm38mm10GRCm38
MGSCv37655,787,012 - 55,928,592 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36655,766,473 - 55,908,200 (+)NCBIMGSCv36mm8
Celera656,368,792 - 56,510,574 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.65NCBI
Itprid1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8486,345,467 - 86,505,820 (+)NCBIGRCr8
mRatBN7.2485,015,264 - 85,172,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl485,015,190 - 85,172,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx490,293,243 - 90,412,194 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0486,068,648 - 86,187,608 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0484,480,029 - 84,592,292 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0486,080,412 - 86,233,808 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl486,125,316 - 86,233,804 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04150,732,838 - 150,886,213 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4484,692,099 - 84,803,959 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera479,926,418 - 80,037,218 (+)NCBICelera
Cytogenetic Map4q24NCBI
Itprid1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541032,564,021 - 32,691,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541032,564,108 - 32,691,390 (+)NCBIChiLan1.0ChiLan1.0
ITPRID1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2636,229,206 - 36,463,069 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1784,553,934 - 84,787,757 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0732,138,256 - 32,265,204 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1732,256,763 - 32,385,246 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl732,256,671 - 32,383,052 (+)Ensemblpanpan1.1panPan2
ITPRID1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11444,021,245 - 44,160,993 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1444,052,475 - 44,157,086 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1443,454,020 - 43,596,115 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01443,963,360 - 44,106,100 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1443,963,149 - 44,103,120 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11444,087,964 - 44,225,973 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01443,754,142 - 43,895,111 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01444,149,084 - 44,259,255 (+)NCBIUU_Cfam_GSD_1.0
ITPRID1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1841,456,829 - 41,589,002 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11841,491,840 - 41,768,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21845,684,374 - 45,764,343 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPRID1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12126,739,557 - 26,830,614 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2126,739,802 - 26,827,829 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604277,881,665 - 77,972,519 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itprid1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624783774,781 - 894,978 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624783774,784 - 897,457 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005319280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000020245   ⟹   ENSSTOP00000021710
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364787,726,487 - 7,807,910 (+)Ensembl
RefSeq Acc Id: XM_005319280   ⟹   XP_005319337
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511888,514,732 - 88,596,297 (+)NCBI
SpeTri2.0NW_0049364787,726,463 - 7,807,863 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319337 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021710.2
GenBank Protein KAG3278097 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005319337   ⟸   XM_005319280
- UniProtKB: I3NBG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000021710   ⟸   ENSSTOT00000020245
Protein Domains
ITPR-interacting


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002962 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020245.2 UniProtKB/TrEMBL
InterPro ITPR-bd UniProtKB/TrEMBL
  SSFA2_C UniProtKB/TrEMBL
  TESPA1-like UniProtKB/TrEMBL
NCBI Gene Ccdc129 ENTREZGENE
PANTHER PROTEIN ITPRID1 UniProtKB/TrEMBL
  PTHR17469 UniProtKB/TrEMBL
Pfam KRAP_IP3R_bind UniProtKB/TrEMBL
  SSFA2_C UniProtKB/TrEMBL
SMART KRAP_IP3R_bind UniProtKB/TrEMBL
UniProt I3NBG3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-19 Itprid1  ITPR interacting domain containing 1  Ccdc129  coiled-coil domain containing 129  Symbol and/or name change 5135510 APPROVED