Ccl14 (C-C motif chemokine ligand 14) - Rat Genome Database

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Gene: Ccl14 (C-C motif chemokine ligand 14) Ictidomys tridecemlineatus
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Symbol: Ccl14
Name: C-C motif chemokine ligand 14
RGD ID: 12526833
Description: ENCODES a protein that exhibits chemokine activity (inferred); cytokine activity (inferred); INVOLVED IN eosinophil chemotaxis (inferred); immune response (inferred); signal transduction (inferred); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-C motif chemokine 14
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,781,327 - 36,784,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490290,437 - 293,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490290,452 - 293,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccl14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,781,327 - 36,784,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490290,437 - 293,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490290,452 - 293,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCL14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,983,288 - 35,986,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,983,288 - 35,987,004 (-)EnsemblGRCh38hg38GRCh38
GRCh371734,310,324 - 34,313,765 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,334,805 - 31,337,852 (-)NCBINCBI36Build 36hg18NCBI36
Celera1731,220,248 - 31,223,320 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,495,709 - 30,498,781 (-)NCBIHuRef
CHM1_11734,375,227 - 34,378,299 (-)NCBICHM1_1
T2T-CHM13v2.01736,931,192 - 36,934,633 (-)NCBIT2T-CHM13v2.0
Ccl14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495548110,336,758 - 10,340,397 (-)NCBIChiLan1.0ChiLan1.0
CCL14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,476,521 - 28,494,586 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,370,145 - 30,373,593 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,809,234 - 20,812,370 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,093,710 - 21,107,844 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,104,695 - 21,107,844 (+)Ensemblpanpan1.1panPan2
CCL14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,782,912 - 37,785,669 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,782,933 - 37,785,531 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha937,005,603 - 37,008,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,592,635 - 38,595,394 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1937,375,861 - 37,378,620 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,661,244 - 37,664,001 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,748,576 - 37,751,339 (+)NCBIUU_Cfam_GSD_1.0
CCL14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,611,868 - 39,616,159 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,611,887 - 39,616,050 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,183,987 - 41,185,425 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ccl14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248753,372,982 - 3,376,663 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000038312   ⟹   ENSSTOP00000026630
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936490290,437 - 293,360 (-)Ensembl
RefSeq Acc Id: XM_005321497   ⟹   XP_005321554
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,781,327 - 36,784,598 (+)NCBI
SpeTri2.0NW_004936490290,452 - 293,330 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000026630.1
GenBank Protein KAG3269468 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005321554   ⟸   XM_005321497
- UniProtKB: A0A287CZ67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000026630   ⟸   ENSSTOT00000038312
Protein Domains
Chemokine interleukin-8-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000033490 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000038312.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
NCBI Gene Ccl14 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 14 UniProtKB/TrEMBL
  PTHR12015 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A287CZ67 ENTREZGENE, UniProtKB/TrEMBL