Tmem235 (transmembrane protein 235) - Rat Genome Database

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Gene: Tmem235 (transmembrane protein 235) Ictidomys tridecemlineatus
Analyze
Symbol: Tmem235
Name: transmembrane protein 235
RGD ID: 12525824
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN apical plasma membrane (inferred); cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,577,353 - 3,585,292 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365942,828,544 - 2,833,176 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365942,828,544 - 2,833,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmem235
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,577,353 - 3,585,292 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365942,828,544 - 2,833,176 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365942,828,544 - 2,833,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM235
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,231,293 - 78,240,987 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,231,310 - 78,240,987 (+)EnsemblGRCh38hg38GRCh38
GRCh371776,227,374 - 76,237,068 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,739,700 - 73,749,114 (+)NCBINCBI36Build 36hg18NCBI36
Celera1772,823,419 - 72,833,096 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,651,521 - 71,661,193 (+)NCBIHuRef
CHM1_11776,291,917 - 76,301,608 (+)NCBICHM1_1
T2T-CHM13v2.01779,125,384 - 79,135,078 (+)NCBIT2T-CHM13v2.0
Tmem235
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,751,578 - 117,756,369 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,751,578 - 117,756,369 (+)EnsemblGRCm39 Ensembl
GRCm3811117,860,752 - 117,865,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,860,752 - 117,865,543 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,722,066 - 117,726,857 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,676,842 - 117,680,449 (+)NCBIMGSCv36mm8
Celera11129,605,774 - 129,610,778 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
Tmem235
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810103,585,179 - 103,590,869 (+)NCBIGRCr8
mRatBN7.210103,081,716 - 103,092,187 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10103,086,497 - 103,092,184 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010106,864,831 - 106,875,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,869,401 - 106,874,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,503,501 - 106,513,769 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10101,641,753 - 101,652,146 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Tmem235
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,327,909 - 4,338,513 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,329,436 - 4,333,484 (-)NCBIChiLan1.0ChiLan1.0
TMEM235
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21994,281,720 - 94,305,659 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11799,111,226 - 99,135,104 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,308,950 - 72,319,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11777,855,519 - 77,869,262 (+)NCBIpanpan1.1PanPan1.1panPan2
TMEM235
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.192,918,854 - 2,923,390 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl92,919,594 - 2,923,360 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,602,740 - 3,607,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.093,597,123 - 3,601,619 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl93,596,540 - 3,601,619 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.193,620,207 - 3,624,702 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.093,744,407 - 3,748,903 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.093,825,769 - 3,830,265 (-)NCBIUU_Cfam_GSD_1.0
TMEM235
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1123,737,283 - 3,742,745 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMEM235
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,244,579 - 70,251,937 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1670,244,594 - 70,251,690 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607741,354,435 - 41,362,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem235
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248017,737,669 - 7,747,222 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000022403   ⟹   ENSSTOP00000015414
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365942,828,544 - 2,833,176 (+)Ensembl
RefSeq Acc Id: XM_005332717   ⟹   XP_005332774
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056023,577,353 - 3,585,292 (-)NCBI
SpeTri2.0NW_0049365942,828,544 - 2,833,176 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040268381   ⟹   XP_040124315
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056023,578,888 - 3,585,292 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005332774 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124315 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015414.1
GenBank Protein KAG3268371 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005332774   ⟸   XM_005332717
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040124315   ⟸   XM_040268381
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000015414   ⟸   ENSSTOT00000022403


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023248 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022403.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  TMEM114/TMEM235 UniProtKB/TrEMBL
NCBI Gene Tmem235 ENTREZGENE
PANTHER PTHR20516 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 235 UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
PRINTS CLAUDIN UniProtKB/TrEMBL
UniProt I3MTG9_ICTTR UniProtKB/TrEMBL