Dpt (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024409344 | 99,876,357 - 99,900,968 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936481 | 17,722,977 - 17,747,718 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936481 | 17,723,108 - 17,747,712 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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DPT (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 168,695,468 - 168,729,206 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 168,695,468 - 168,729,206 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 168,664,706 - 168,698,444 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 166,931,330 - 166,965,052 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 1 | 165,396,364 - 165,430,086 | NCBI | | | | | Celera | 1 | 141,774,485 - 141,808,228 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q24.2 | NCBI | | | | | HuRef | 1 | 139,910,794 - 139,944,541 (-) | NCBI | | HuRef | | | CHM1_1 | 1 | 170,086,722 - 170,120,451 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 168,050,592 - 168,084,377 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Dpt (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 164,624,232 - 164,651,843 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 164,624,213 - 164,651,835 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 164,796,663 - 164,824,274 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 164,796,644 - 164,824,266 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 166,726,863 - 166,754,397 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 166,633,407 - 166,660,941 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 167,227,731 - 167,255,812 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | H2.2 | NCBI | | | | | cM Map | 1 | 72.12 | NCBI | | | | |
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Dpt (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 13 | 79,656,341 - 79,684,759 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 13 | 77,123,224 - 77,151,646 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 13 | 77,123,115 - 77,151,639 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 13 | 79,732,107 - 79,760,519 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 13 | 81,036,109 - 81,064,519 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 13 | 78,287,025 - 78,315,359 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 13 | 83,073,307 - 83,102,404 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 13 | 83,073,544 - 83,102,401 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 13 | 87,954,222 - 87,983,319 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 13 | 80,562,890 - 80,591,361 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 13 | 80,577,137 - 80,605,551 (+) | NCBI | | | | | Celera | 13 | 76,840,691 - 76,869,164 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q23 | NCBI | | | | |
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Dpt (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955462 | 8,451,112 - 8,480,827 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955462 | 8,451,159 - 8,480,085 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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DPT (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 80,662,672 - 81,069,860 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 80,331,075 - 80,738,643 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 144,182,053 - 144,218,632 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 147,904,343 - 147,938,224 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 147,904,337 - 147,938,208 (-) | Ensembl | panpan1.1 | | panPan2 | |
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DPT (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 7 | 29,830,415 - 29,855,479 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 7 | 29,830,415 - 29,857,061 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 7 | 29,361,634 - 29,386,699 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 7 | 29,647,765 - 29,672,841 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 7 | 29,647,765 - 29,672,841 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 7 | 29,481,238 - 29,506,287 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 7 | 29,516,851 - 29,541,912 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 7 | 29,754,845 - 29,779,925 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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DPT (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 4 | 82,287,730 - 82,319,366 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 4 | 82,287,657 - 82,319,380 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 4 | 89,969,400 - 90,001,110 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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DPT (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 25 | 60,295,900 - 60,329,678 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 25 | 60,295,709 - 60,349,682 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666055 | 61,979,608 - 62,013,288 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Dpt (Heterocephalus glaber - naked mole-rat) |
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