Kif5a (kinesin family member 5A) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Kif5a (kinesin family member 5A) Ictidomys tridecemlineatus
Analyze
Symbol: Kif5a
Name: kinesin family member 5A
RGD ID: 12525591
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); scaffold protein binding (ortholog); INVOLVED IN anterograde axonal protein transport (ortholog); cellular response to ethanol (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); amyotrophic lateral sclerosis type 25 (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); central region of growth cone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin family member 5A, transcript variant X1; kinesin family member 5A, transcript variant X2; kinesin heavy chain; kinesin heavy chain isoform 5A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,137,419 - 57,172,692 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,697,492 - 1,732,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,697,531 - 1,730,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kif5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,137,419 - 57,172,692 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,697,492 - 1,732,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,697,531 - 1,730,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,550,044 - 57,586,633 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,546,026 - 57,586,633 (+)EnsemblGRCh38hg38GRCh38
GRCh371257,943,827 - 57,980,416 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,230,114 - 56,264,821 (+)NCBINCBI36Build 36hg18NCBI36
Build 341256,230,113 - 56,264,821NCBI
Celera1257,599,677 - 57,634,382 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,981,745 - 55,016,257 (+)NCBIHuRef
CHM1_11257,911,685 - 57,946,386 (+)NCBICHM1_1
T2T-CHM13v2.01257,518,283 - 57,554,872 (+)NCBIT2T-CHM13v2.0
Kif5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,061,564 - 127,102,217 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,061,565 - 127,099,217 (-)EnsemblGRCm39 Ensembl
GRCm3810127,225,695 - 127,266,348 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,225,696 - 127,263,348 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,662,751 - 126,700,419 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,628,648 - 126,666,029 (-)NCBIMGSCv36mm8
Celera10129,618,645 - 129,655,868 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Kif5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8764,937,210 - 64,974,339 (-)NCBIGRCr8
mRatBN7.2763,051,894 - 63,089,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,049,424 - 63,092,858 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx764,941,174 - 64,978,298 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,143,590 - 67,180,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0766,944,692 - 66,982,059 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,515,832 - 70,552,897 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,513,343 - 70,556,827 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,693,375 - 70,727,047 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,183,575 - 67,220,766 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,204,304 - 67,241,496 (-)NCBI
Celera760,193,348 - 60,229,555 (-)NCBICelera
Cytogenetic Map7q22NCBI
Kif5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,287,111 - 5,310,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,264,274 - 5,310,962 (+)NCBIChiLan1.0ChiLan1.0
KIF5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21036,754,420 - 36,791,175 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11236,751,196 - 36,787,946 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,340,201 - 31,376,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,599,376 - 31,635,677 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,599,376 - 31,635,327 (-)Ensemblpanpan1.1panPan2
KIF5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,637,007 - 1,666,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,636,932 - 1,664,767 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,700,232 - 1,729,959 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,646,391 - 1,676,129 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,646,235 - 1,676,121 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,624,071 - 1,653,916 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,865,983 - 1,895,693 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,990,984 - 2,020,928 (+)NCBIUU_Cfam_GSD_1.0
KIF5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,816,854 - 22,851,973 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,813,617 - 22,851,976 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KIF5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,458,795 - 53,493,801 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037192,467,068 - 192,505,360 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,375,774 - 10,409,566 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,375,132 - 10,409,575 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000001178   ⟹   ENSSTOP00000001053
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,697,967 - 1,729,187 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000034530   ⟹   ENSSTOP00000027064
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,697,492 - 1,732,832 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000038023   ⟹   ENSSTOP00000031334
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,697,492 - 1,732,832 (+)Ensembl
RefSeq Acc Id: XM_005335682   ⟹   XP_005335739
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,137,419 - 57,172,688 (-)NCBI
SpeTri2.0NW_0049366461,697,531 - 1,730,376 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040280418   ⟹   XP_040136352
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,137,419 - 57,172,692 (-)NCBI
RefSeq Acc Id: XM_040280419   ⟹   XP_040136353
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,137,419 - 57,172,691 (-)NCBI
RefSeq Acc Id: XM_040280420   ⟹   XP_040136354
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,137,419 - 57,172,691 (-)NCBI
RefSeq Acc Id: XM_040280421   ⟹   XP_040136355
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,137,419 - 57,172,690 (-)NCBI
RefSeq Acc Id: XM_040280422   ⟹   XP_040136356
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,137,419 - 57,172,690 (-)NCBI
RefSeq Acc Id: XP_005335739   ⟸   XM_005335682
- Peptide Label: isoform X6
- UniProtKB: A0A287DCS6 (UniProtKB/TrEMBL),   I3LY42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040136352   ⟸   XM_040280418
- Peptide Label: isoform X1
- UniProtKB: I3LY42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040136353   ⟸   XM_040280419
- Peptide Label: isoform X2
- UniProtKB: I3LY42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040136354   ⟸   XM_040280420
- Peptide Label: isoform X3
- UniProtKB: I3LY42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040136356   ⟸   XM_040280422
- Peptide Label: isoform X5
- UniProtKB: I3LY42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040136355   ⟸   XM_040280421
- Peptide Label: isoform X4
- UniProtKB: I3LY42 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000001053   ⟸   ENSSTOT00000001178
Ensembl Acc Id: ENSSTOP00000027064   ⟸   ENSSTOT00000034530
Ensembl Acc Id: ENSSTOP00000031334   ⟸   ENSSTOT00000038023
Protein Domains
Kinesin motor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001164 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001178.3 UniProtKB/TrEMBL
  ENSSTOT00000034530.1 UniProtKB/TrEMBL
  ENSSTOT00000038023.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/TrEMBL
  6.10.250.1590 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Kif5a ENTREZGENE
PANTHER CENTROMERE PROTEIN E UniProtKB/TrEMBL
  KINESIN MOTOR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287D0K9_ICTTR UniProtKB/TrEMBL
  A0A287DCS6 ENTREZGENE, UniProtKB/TrEMBL
  I3LY42 ENTREZGENE, UniProtKB/TrEMBL