Spink2 (serine peptidase inhibitor Kazal type 2) - Rat Genome Database

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Gene: Spink2 (serine peptidase inhibitor Kazal type 2) Ictidomys tridecemlineatus
Analyze
Symbol: Spink2
Name: serine peptidase inhibitor Kazal type 2
RGD ID: 12525583
Description: ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (inferred); INVOLVED IN acrosome assembly (ortholog); fertilization (ortholog); male germ cell proliferation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIk (ortholog); genetic disease (ortholog); spermatogenic failure 29 (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); neuron projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine peptidase inhibitor, Kazal type 2; serine protease inhibitor Kazal-type 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528527,328,005 - 27,333,053 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648218,965,186 - 18,970,189 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Spink2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528527,328,005 - 27,333,053 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648218,965,186 - 18,970,189 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPINK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38456,809,860 - 56,821,869 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl456,809,860 - 56,821,742 (-)EnsemblGRCh38hg38GRCh38
GRCh37457,676,026 - 57,688,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36457,370,791 - 57,382,650 (-)NCBINCBI36Build 36hg18NCBI36
Build 34457,516,961 - 57,528,821NCBI
Celera455,182,079 - 55,193,941 (-)NCBICelera
Cytogenetic Map4q12NCBI
HuRef453,629,453 - 53,641,463 (-)NCBIHuRef
CHM1_1457,711,128 - 57,723,138 (-)NCBICHM1_1
T2T-CHM13v2.0460,297,771 - 60,309,781 (-)NCBIT2T-CHM13v2.0
Spink2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39577,352,953 - 77,364,106 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl577,352,954 - 77,359,318 (-)EnsemblGRCm39 Ensembl
GRCm38577,205,106 - 77,216,258 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl577,205,107 - 77,211,471 (-)EnsemblGRCm38mm10GRCm38
MGSCv37577,634,133 - 77,640,478 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36578,279,883 - 78,286,228 (-)NCBIMGSCv36mm8
Celera574,471,870 - 74,478,375 (-)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map541.53NCBI
Spink2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,321,976 - 31,328,622 (+)NCBIGRCr8
mRatBN7.21430,967,682 - 30,974,326 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1430,967,714 - 30,974,326 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,346,157 - 31,352,477 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01432,654,484 - 32,660,806 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,139,138 - 31,145,460 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01433,247,278 - 33,253,913 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,247,274 - 33,253,913 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,906,821 - 33,913,450 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,038,333 - 33,044,841 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,245,183 - 33,251,691 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11433,245,182 - 33,251,442 (+)NCBI
Celera1430,281,809 - 30,288,317 (+)NCBICelera
Cytogenetic Map14p11NCBI
Spink2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544714,285,248 - 14,291,835 (+)NCBIChiLan1.0ChiLan1.0
SPINK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2372,957,685 - 72,969,713 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1473,163,245 - 73,175,274 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0467,101,686 - 67,113,671 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1473,671,707 - 73,683,685 (+)NCBIpanpan1.1PanPan1.1panPan2
SPINK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,952,869 - 48,964,862 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,944,135 - 48,964,831 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,843,656 - 48,855,653 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01349,567,563 - 49,580,138 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1349,444,709 - 49,580,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11349,239,853 - 49,251,843 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01348,768,895 - 48,781,446 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01349,713,793 - 49,726,350 (-)NCBIUU_Cfam_GSD_1.0
SPINK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1855,982,377 - 55,989,592 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2857,511,290 - 57,518,487 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPINK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1711,850,394 - 11,862,084 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606612,518,005 - 12,529,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spink2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476112,630,185 - 12,663,637 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021722714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021722714   ⟹   XP_021578389
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528527,328,005 - 27,333,053 (+)NCBI
SpeTri2.0NW_00493648218,965,186 - 18,970,189 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021578389 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023588.1
GenBank Protein KAG3276574 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021578389   ⟸   XM_021722714
- UniProtKB: I3NGU1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Kazal-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024885 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029505.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.30 UniProtKB/TrEMBL
InterPro Kazal_dom UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/TrEMBL
  SPINK2 UniProtKB/TrEMBL
NCBI Gene Spink2 ENTREZGENE
PANTHER PTHR47608 UniProtKB/TrEMBL
  SERINE PROTEASE INHIBITOR KAZAL-TYPE 2 UniProtKB/TrEMBL
Pfam Kazal_1 UniProtKB/TrEMBL
PROSITE KAZAL_1 UniProtKB/TrEMBL
  KAZAL_2 UniProtKB/TrEMBL
SMART KAZAL UniProtKB/TrEMBL
Superfamily-SCOP SSF100895 UniProtKB/TrEMBL
UniProt I3NGU1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-08 Spink2  serine peptidase inhibitor Kazal type 2  Spink2  serine peptidase inhibitor, Kazal type 2  Symbol and/or name change 5135510 APPROVED