Nipa1 (NIPA magnesium transporter 1) - Rat Genome Database

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Gene: Nipa1 (NIPA magnesium transporter 1) Ictidomys tridecemlineatus
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Symbol: Nipa1
Name: NIPA magnesium transporter 1
RGD ID: 12525528
Description: INVOLVED IN magnesium ion transport (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN early endosome (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: magnesium transporter NIPA1; non imprinted in Prader-Willi/Angelman syndrome 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640120,516,973 - 120,537,137 (-)NCBI
SpeTri2.0NW_00493647138,363,521 - 38,403,647 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Nipa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640120,516,973 - 120,537,137 (-)NCBI
SpeTri2.0NW_00493647138,363,521 - 38,403,647 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1522,773,063 - 22,829,789 (+)EnsemblGRCh38hg38GRCh38
GRCh381522,786,225 - 22,829,789 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371523,043,279 - 23,086,843 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361520,594,720 - 20,637,877 (-)NCBINCBI36hg18NCBI36
Celera151,293,128 - 1,336,596 (+)NCBI
Cytogenetic Map15q11.2NCBI
HuRef151,354,946 - 1,373,627 (-)NCBIHuRef
CHM1_11522,992,596 - 23,036,148 (-)NCBICHM1_1
Nipa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39755,628,232 - 55,669,348 (-)NCBIGRCm39mm39
GRCm39 Ensembl755,627,315 - 55,669,702 (-)Ensembl
GRCm38755,978,484 - 56,019,600 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl755,977,567 - 56,019,954 (-)EnsemblGRCm38mm10GRCm38
MGSCv37763,233,854 - 63,274,943 (-)NCBIGRCm37mm9NCBIm37
MGSCv36755,846,503 - 55,887,592 (-)NCBImm8
Celera753,324,994 - 53,365,742 (-)NCBICelera
Cytogenetic Map7B5NCBI
Nipa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21106,834,000 - 106,875,148 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl1114,386,757 - 114,422,733 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01114,385,484 - 114,422,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01115,392,570 - 115,410,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41107,373,113 - 107,390,777 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11107,452,013 - 107,480,546 (-)NCBI
Celera1101,049,294 - 101,085,273 (-)NCBICelera
Cytogenetic Map1q22NCBI
Nipa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555331,249,500 - 1,284,588 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555331,244,232 - 1,304,497 (-)NCBIChiLan1.0ChiLan1.0
NIPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11520,612,002 - 20,655,771 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1520,617,547 - 20,655,686 (-)Ensemblpanpan1.1panPan2
NIPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1332,003,454 - 32,056,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl332,003,033 - 32,051,684 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha334,626,242 - 34,679,592 (-)NCBI
ROS_Cfam_1.0332,279,913 - 32,333,487 (-)NCBI
UMICH_Zoey_3.1331,813,483 - 31,866,831 (-)NCBI
UNSW_CanFamBas_1.0332,062,845 - 32,116,213 (-)NCBI
UU_Cfam_GSD_1.0332,173,633 - 32,227,205 (-)NCBI
NIPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1532,208,858 - 32,260,006 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11532,208,857 - 32,260,064 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NIPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,718,832 - 53,746,456 (-)NCBI
Vero_WHO_p1.0NW_02366605436,451,033 - 36,492,084 (-)NCBI
Nipa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248962,638,161 - 2,684,524 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021725634   ⟹   XP_021581309
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640120,516,973 - 120,537,137 (-)NCBI
SpeTri2.0NW_00493647138,363,521 - 38,403,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275772   ⟹   XP_040131706
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640120,516,973 - 120,537,106 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021581309 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131706 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3262425 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021581309   ⟸   XM_021725634
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040131706   ⟸   XM_040275772
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene Nipa1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-27 Nipa1  NIPA magnesium transporter 1    non imprinted in Prader-Willi/Angelman syndrome 1  Symbol and/or name change 5135510 APPROVED