Slc4a11 (solute carrier family 4 member 11) - Rat Genome Database

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Gene: Slc4a11 (solute carrier family 4 member 11) Ictidomys tridecemlineatus
Analyze
Symbol: Slc4a11
Name: solute carrier family 4 member 11
RGD ID: 12525377
Description: ENCODES a protein that exhibits active borate transmembrane transporter activity (inferred); bicarbonate transmembrane transporter activity (inferred); borate efflux transmembrane transporter activity (inferred); INVOLVED IN bicarbonate transport (inferred); borate transmembrane transport (inferred); borate transport (inferred); ASSOCIATED WITH congenital hereditary endothelial dystrophy of cornea (ortholog); corneal dystrophy (ortholog); Corneal Dystrophy, Fuchs Endothelial, 4 (ortholog); FOUND IN vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium bicarbonate transporter-like protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,055,165 - 167,066,274 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648515,486,372 - 15,497,673 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648515,486,565 - 15,497,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc4a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,055,165 - 167,066,274 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648515,486,372 - 15,497,673 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648515,486,565 - 15,497,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38203,227,417 - 3,239,559 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl203,227,417 - 3,239,559 (-)EnsemblGRCh38hg38GRCh38
GRCh37203,208,063 - 3,220,205 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,156,063 - 3,166,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 34203,156,063 - 3,166,373NCBI
Celera203,270,026 - 3,281,861 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef203,156,372 - 3,168,190 (-)NCBIHuRef
CHM1_1203,208,125 - 3,219,949 (-)NCBICHM1_1
T2T-CHM13v2.0203,258,367 - 3,270,505 (-)NCBIT2T-CHM13v2.0
Slc4a11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,526,027 - 130,539,439 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,526,033 - 130,539,439 (-)EnsemblGRCm39 Ensembl
GRCm382130,684,107 - 130,697,519 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,684,113 - 130,697,519 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,509,844 - 130,523,255 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362130,375,549 - 130,388,960 (-)NCBIMGSCv36mm8
Celera2131,908,906 - 131,922,301 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.24NCBI
Slc4a11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83138,353,305 - 138,365,983 (-)NCBIGRCr8
mRatBN7.23117,900,223 - 117,912,787 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,900,223 - 117,912,674 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3121,794,589 - 121,806,946 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03130,392,225 - 130,404,562 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03128,050,725 - 128,063,082 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03123,224,242 - 123,236,535 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,224,242 - 123,236,535 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,722,370 - 129,734,676 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,313,086 - 118,325,392 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13118,218,975 - 118,239,305 (-)NCBI
Celera3116,711,040 - 116,723,436 (-)NCBICelera
Cytogenetic Map3q36NCBI
Slc4a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541514,120,301 - 14,131,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541514,123,021 - 14,133,437 (-)NCBIChiLan1.0ChiLan1.0
SLC4A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,193,933 - 4,212,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1204,188,361 - 4,208,785 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0203,311,640 - 3,324,966 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1203,074,434 - 3,086,445 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl203,074,804 - 3,086,157 (-)Ensemblpanpan1.1panPan2
SLC4A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,057,437 - 18,068,420 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,057,517 - 18,068,425 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,885,917 - 17,896,861 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02418,476,201 - 18,487,134 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2418,475,793 - 18,487,130 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,069,908 - 18,080,840 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,182,276 - 18,193,225 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02418,509,870 - 18,520,803 (+)NCBIUU_Cfam_GSD_1.0
SLC4A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,446,831 - 32,458,245 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,445,360 - 32,458,246 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,837,930 - 36,840,155 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1233,897,262 - 33,911,498 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl233,897,630 - 33,908,039 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607110,600,358 - 10,613,671 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247414,328,675 - 4,339,851 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247414,328,745 - 4,339,919 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006494   ⟹   ENSSTOP00000005808
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648515,486,372 - 15,497,673 (+)Ensembl
RefSeq Acc Id: XM_021723197   ⟹   XP_021578872
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640167,055,165 - 167,066,274 (+)NCBI
SpeTri2.0NW_00493648515,486,565 - 15,497,638 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274309   ⟹   XP_040130243
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640167,055,439 - 167,066,274 (+)NCBI
RefSeq Acc Id: XM_040274310   ⟹   XP_040130244
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640167,055,439 - 167,066,274 (+)NCBI
RefSeq Acc Id: XM_040274311   ⟹   XP_040130245
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640167,055,481 - 167,066,274 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021578872 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130243 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130244 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130245 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005808.2
GenBank Protein KAG3262916 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021578872   ⟸   XM_021723197
- UniProtKB: I3M810 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130243   ⟸   XM_040274309
- UniProtKB: I3M810 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130244   ⟸   XM_040274310
- UniProtKB: I3M810 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130245   ⟸   XM_040274311
- UniProtKB: I3M810 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000005808   ⟸   ENSSTOT00000006494
Protein Domains
Bicarbonate transporter-like transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006469 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006494.3 UniProtKB/TrEMBL
Gene3D-CATH Helical hairpin bin UniProtKB/TrEMBL
InterPro HCO3_transpt_C UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/TrEMBL
NCBI Gene Slc4a11 ENTREZGENE
PANTHER PTHR11453 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 4 MEMBER 11 UniProtKB/TrEMBL
Pfam HCO3_cotransp UniProtKB/TrEMBL
PRINTS HCO3TRNSPORT UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/TrEMBL
UniProt I3M810 ENTREZGENE, UniProtKB/TrEMBL