Ubqln1 (ubiquilin 1) - Rat Genome Database

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Gene: Ubqln1 (ubiquilin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ubqln1
Name: ubiquilin 1
RGD ID: 12524722
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN aggrephagy (inferred); autophagosome assembly (inferred); autophagosome maturation (inferred); ASSOCIATED WITH genetic disease (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN aggresome (inferred); autophagosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquilin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947122,436,790 - 122,481,818 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936828542,407 - 588,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936828543,651 - 588,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ubqln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947122,436,790 - 122,481,818 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936828542,407 - 588,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936828543,651 - 588,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBQLN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38983,659,968 - 83,707,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl983,659,968 - 83,707,958 (-)EnsemblGRCh38hg38GRCh38
GRCh37986,274,883 - 86,322,873 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36985,464,699 - 85,512,773 (-)NCBINCBI36Build 36hg18NCBI36
Build 34983,505,905 - 83,552,422NCBI
Celera956,844,906 - 56,893,172 (-)NCBICelera
Cytogenetic Map9q21.32NCBI
HuRef956,100,224 - 56,148,493 (-)NCBIHuRef
CHM1_1986,421,618 - 86,469,907 (-)NCBICHM1_1
T2T-CHM13v2.0995,809,692 - 95,857,669 (-)NCBIT2T-CHM13v2.0
Ubqln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,323,970 - 58,363,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,323,970 - 58,363,467 (-)EnsemblGRCm39 Ensembl
GRCm381358,176,156 - 58,215,653 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,176,156 - 58,215,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,277,517 - 58,317,014 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361358,185,785 - 58,225,215 (-)NCBIMGSCv36mm8
Celera1359,238,584 - 59,277,865 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.95NCBI
Ubqln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,438,456 - 6,482,498 (+)NCBIGRCr8
mRatBN7.2176,439,002 - 6,477,096 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,439,002 - 6,477,090 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx176,462,325 - 6,499,084 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,994,298 - 8,031,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,458,709 - 6,495,468 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0176,840,441 - 6,878,842 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl176,840,463 - 6,878,844 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,044,221 - 9,081,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41712,370,389 - 12,418,868 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11712,370,388 - 12,418,868 (+)NCBI
Celera176,548,513 - 6,585,082 (+)NCBICelera
Cytogenetic Map17p14NCBI
Ubqln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554323,575,272 - 3,616,691 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554323,575,034 - 3,617,029 (+)NCBIChiLan1.0ChiLan1.0
UBQLN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,819,039 - 82,867,380 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1982,824,982 - 82,873,323 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0941,170,416 - 41,218,656 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1982,597,507 - 82,645,587 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl982,597,507 - 82,645,587 (-)Ensemblpanpan1.1panPan2
UBQLN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,767,345 - 75,812,278 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,767,188 - 75,838,051 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha176,417,095 - 76,461,954 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0176,068,847 - 76,113,777 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl176,068,563 - 76,139,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1175,882,246 - 75,927,063 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0175,647,432 - 75,692,286 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,348,320 - 76,393,178 (+)NCBIUU_Cfam_GSD_1.0
UBQLN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1031,275,868 - 31,317,516 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11031,275,916 - 31,317,521 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21035,363,230 - 35,404,196 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBQLN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11294,462,867 - 94,512,313 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1294,461,972 - 94,511,747 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603882,876,902 - 82,926,074 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubqln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248096,436,658 - 6,487,251 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248096,434,842 - 6,487,442 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005340911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000013458   ⟹   ENSSTOP00000012059
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936828545,478 - 588,677 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000031895   ⟹   ENSSTOP00000025771
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936828542,407 - 588,679 (-)Ensembl
RefSeq Acc Id: XM_005340911   ⟹   XP_005340968
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947122,436,790 - 122,481,818 (+)NCBI
SpeTri2.0NW_004936828543,651 - 588,673 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005340968 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012059.3
  ENSSTOP00000025771.1
GenBank Protein KAG3287049 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005340968   ⟸   XM_005340911
- UniProtKB: A0A287CWW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012059   ⟸   ENSSTOT00000013458
RefSeq Acc Id: ENSSTOP00000025771   ⟸   ENSSTOT00000031895
Protein Domains
UBA   Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013462 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013458.3 UniProtKB/TrEMBL
  ENSSTOT00000031895.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.100 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro STI1_HS-bd UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  Ubiquilin UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Ubqln1 ENTREZGENE
PANTHER UBIQUILIN UniProtKB/TrEMBL
  UBIQUILIN-1 UniProtKB/TrEMBL
Pfam UBA UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART STI1 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A287CWW3 ENTREZGENE, UniProtKB/TrEMBL
  I3ML20_ICTTR UniProtKB/TrEMBL