Wnt8a (Wnt family member 8A) - Rat Genome Database

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Gene: Wnt8a (Wnt family member 8A) Ictidomys tridecemlineatus
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Symbol: Wnt8a
Name: Wnt family member 8A
RGD ID: 12523764
Description: ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment (ortholog); cell morphogenesis (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant non-syndromic intellectual disability 31 (ortholog); autosomal dominant nonsyndromic deafness 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,332,315 - 154,337,724 (-)NCBI
SpeTri2.0NW_0049365317,273,681 - 7,279,394 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Wnt8a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,332,315 - 154,337,724 (-)NCBI
SpeTri2.0NW_0049365317,273,681 - 7,279,394 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT8A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5138,083,990 - 138,092,365 (+)EnsemblGRCh38hg38GRCh38
GRCh385138,077,367 - 138,092,900 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375137,419,722 - 137,428,054 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,447,673 - 137,455,098 (+)NCBINCBI36hg18NCBI36
Build 345137,447,577 - 137,455,953NCBI
Celera5133,541,722 - 133,549,145 (+)NCBI
Cytogenetic Map5q31.2NCBI
HuRef5132,610,733 - 132,618,179 (+)NCBIHuRef
CHM1_15136,852,171 - 136,860,648 (+)NCBICHM1_1
Wnt8a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,675,380 - 34,681,114 (+)NCBIGRCm39mm39
GRCm39 Ensembl1834,675,366 - 34,681,326 (+)Ensembl
GRCm381834,542,327 - 34,548,061 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,542,313 - 34,548,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371834,701,982 - 34,707,715 (+)NCBIGRCm37mm9NCBIm37
MGSCv361834,667,114 - 34,673,074 (+)NCBImm8
Celera1834,995,948 - 35,001,675 (+)NCBICelera
Cytogenetic Map18B1NCBI
Wnt8a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21826,137,690 - 26,143,283 (+)NCBI
Rnor_6.0 Ensembl1827,331,236 - 27,336,829 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01827,331,236 - 27,336,829 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01827,044,608 - 27,050,201 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,007,156 - 27,012,749 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11827,029,469 - 27,038,824 (+)NCBI
Celera1825,876,225 - 25,881,818 (+)NCBICelera
Cytogenetic Map18p12NCBI
Wnt8a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,332,636 - 2,338,085 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,332,636 - 2,338,099 (-)NCBIChiLan1.0ChiLan1.0
WNT8A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15139,598,229 - 139,605,926 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,598,229 - 139,605,926 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05133,419,324 - 133,471,094 (+)NCBIMhudiblu_PPA_v0panPan3
WNT8A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,707,058 - 25,752,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,744,780 - 25,749,748 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,470,773 - 24,519,397 (+)NCBI
ROS_Cfam_1.01126,556,926 - 26,605,507 (+)NCBI
UMICH_Zoey_3.11125,264,436 - 25,313,063 (+)NCBI
UNSW_CanFamBas_1.01125,088,231 - 25,136,559 (+)NCBI
UU_Cfam_GSD_1.01125,751,347 - 25,800,034 (+)NCBI
WNT8A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,103,830 - 140,110,563 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,103,322 - 140,113,682 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,777,794 - 145,784,671 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WNT8A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,750,907 - 40,759,421 (+)NCBI
ChlSab1.1 Ensembl2340,751,780 - 40,758,790 (+)Ensembl
Wnt8a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474330,852,463 - 30,896,443 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005327242   ⟹   XP_005327299
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213154,332,315 - 154,337,724 (-)NCBI
SpeTri2.0NW_0049365317,273,681 - 7,279,394 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327299 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005327299   ⟸   XM_005327242
- UniProtKB: I3M9D2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007249 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000006481 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007254 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
InterPro Protein_Wnt-8A/8C UniProtKB/TrEMBL
  Wnt UniProtKB/TrEMBL
  Wnt8 UniProtKB/TrEMBL
  Wnt_C UniProtKB/TrEMBL
  Wnt_CS UniProtKB/TrEMBL
NCBI Gene Wnt8a ENTREZGENE
PANTHER PTHR12027 UniProtKB/TrEMBL
  PTHR12027:SF92 UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PRINTS WNT8PROTEIN UniProtKB/TrEMBL
  WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
SMART WNT1 UniProtKB/TrEMBL
UniProt I3M9D2 ENTREZGENE, UniProtKB/TrEMBL