Cnnm4 (cyclin and CBS domain divalent metal cation transport mediator 4) - Rat Genome Database

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Gene: Cnnm4 (cyclin and CBS domain divalent metal cation transport mediator 4) Ictidomys tridecemlineatus
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Symbol: Cnnm4
Name: cyclin and CBS domain divalent metal cation transport mediator 4
RGD ID: 12521674
Description: ENCODES a protein that exhibits magnesium ion transmembrane transporter activity (ortholog); sodium ion transmembrane transporter activity (ortholog); INVOLVED IN enamel mineralization (ortholog); magnesium ion homeostasis (ortholog); magnesium ion transport (ortholog); ASSOCIATED WITH Amaurosis Hypertrichosis (ortholog); fundus dystrophy (ortholog); intellectual disability (ortholog); FOUND IN basolateral plasma membrane (ortholog); dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cyclin and CBS domain divalent metal cation transport mediator 4, transcript variant X1; cyclin and CBS domain divalent metal cation transport mediator 4, transcript variant X2; cyclin M4; metal transporter CNNM4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,462,574 - 83,499,496 (+)NCBI
SpeTri2.0NW_004936744715,523 - 754,148 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Cnnm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,462,574 - 83,499,496 (+)NCBI
SpeTri2.0NW_004936744715,523 - 754,148 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNNM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl296,760,902 - 96,811,874 (+)EnsemblGRCh38hg38GRCh38
GRCh38296,760,902 - 96,811,888 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37297,426,639 - 97,477,611 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,790,366 - 96,841,355 (+)NCBINCBI36hg18NCBI36
Build 34296,848,753 - 96,899,482NCBI
Celera291,866,817 - 91,917,794 (+)NCBI
Cytogenetic Map2q11.2NCBI
HuRef291,387,237 - 91,438,072 (+)NCBIHuRef
CHM1_1297,431,549 - 97,482,554 (+)NCBICHM1_1
Cnnm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,510,678 - 36,547,857 (+)NCBIGRCm39mm39
GRCm39 Ensembl136,510,701 - 36,547,845 (+)Ensembl
GRCm38136,471,597 - 36,508,776 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,471,620 - 36,508,764 (+)EnsemblGRCm38mm10GRCm38
MGSCv37136,528,442 - 36,565,621 (+)NCBIGRCm37mm9NCBIm37
MGSCv36136,416,531 - 36,451,508 (+)NCBImm8
Celera136,258,387 - 36,295,587 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.28NCBI
Cnnm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2938,711,726 - 38,750,942 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl938,711,710 - 38,750,942 (+)Ensembl
Rnor_6.0943,049,587 - 43,088,690 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,049,587 - 43,088,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,703,466 - 42,742,596 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,410,644 - 35,448,730 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1935,406,796 - 35,457,552 (+)NCBI
Celera936,478,287 - 36,517,394 (+)NCBICelera
Cytogenetic Map9q21NCBI
Cnnm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,131,348 - 4,177,172 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,131,348 - 4,177,172 (+)NCBIChiLan1.0ChiLan1.0
CNNM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A97,682,730 - 97,731,584 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,682,724 - 97,731,584 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A102,503,084 - 102,553,029 (-)NCBIMhudiblu_PPA_v0panPan3
CNNM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11045,157,418 - 45,197,323 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,138,538 - 45,197,244 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1045,083,622 - 45,123,394 (-)NCBI
ROS_Cfam_1.01046,033,014 - 46,072,636 (-)NCBI
UMICH_Zoey_3.11045,744,456 - 45,783,944 (-)NCBI
UNSW_CanFamBas_1.01046,030,983 - 46,070,598 (-)NCBI
UU_Cfam_GSD_1.01046,214,541 - 46,254,352 (-)NCBI
CNNM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl356,814,829 - 56,858,453 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1356,814,823 - 56,858,460 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2359,514,271 - 59,548,974 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNNM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,095,514 - 1,137,937 (+)NCBI
ChlSab1.1 Ensembl141,095,719 - 1,135,572 (+)Ensembl
Vero_WHO_p1.0NW_023666041168,525,282 - 168,574,499 (+)NCBI
Cnnm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247492,666,884 - 2,701,693 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005339592   ⟹   XP_005339649
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629283,462,580 - 83,499,496 (+)NCBI
SpeTri2.0NW_004936744715,523 - 754,148 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013364878   ⟹   XP_013220332
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629283,462,574 - 83,499,496 (+)NCBI
SpeTri2.0NW_004936744715,523 - 754,148 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040270759   ⟹   XP_040126693
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629283,462,580 - 83,499,068 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005339649 (Get FASTA)   NCBI Sequence Viewer  
  XP_013220332 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126693 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3268059 (Get FASTA)   NCBI Sequence Viewer  
  KAG3268060 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013220332   ⟸   XM_013364878
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005339649   ⟸   XM_005339592
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040126693   ⟸   XM_040270759
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006555 ENTREZGENE
Ensembl Protein ENSSTOP00000005858 ENTREZGENE
NCBI Gene Cnnm4 ENTREZGENE