Tyrp1 (tyrosinase related protein 1) - Rat Genome Database

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Gene: Tyrp1 (tyrosinase related protein 1) Ictidomys tridecemlineatus
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Symbol: Tyrp1
Name: tyrosinase related protein 1
RGD ID: 12520840
Description: ENCODES a protein that exhibits identical protein binding (inferred); metal ion binding (inferred); monooxygenase activity (inferred); INVOLVED IN acetoacetic acid metabolic process (ortholog); melanin metabolic process (ortholog); melanocyte differentiation (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Albinism (ortholog); genetic disease (ortholog); FOUND IN clathrin-coated endocytic vesicle membrane (inferred); cytoplasm (inferred); cytoplasmic vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 5,6-dihydroxyindole-2-carboxylic acid oxidase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947148,084,995 - 148,102,753 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365396,537,509 - 6,556,513 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365396,537,448 - 6,555,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tyrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947148,084,995 - 148,102,753 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365396,537,509 - 6,556,513 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365396,537,448 - 6,555,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TYRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38912,693,385 - 12,710,285 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl912,685,439 - 12,710,285 (+)EnsemblGRCh38hg38GRCh38
GRCh37912,693,385 - 12,710,285 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36912,683,449 - 12,700,258 (+)NCBINCBI36Build 36hg18NCBI36
Build 34912,683,448 - 12,700,258NCBI
Celera912,625,996 - 12,642,868 (+)NCBICelera
Cytogenetic Map9p23NCBI
HuRef912,658,087 - 12,674,962 (+)NCBIHuRef
CHM1_1912,693,770 - 12,710,634 (+)NCBICHM1_1
T2T-CHM13v2.0912,702,721 - 12,719,618 (+)NCBIT2T-CHM13v2.0
Tyrp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39480,752,360 - 80,769,973 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl480,752,360 - 80,769,956 (+)EnsemblGRCm39 Ensembl
GRCm38480,834,123 - 80,851,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl480,834,123 - 80,851,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv37480,480,134 - 80,497,622 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36480,305,461 - 80,322,949 (+)NCBIMGSCv36mm8
Celera479,387,103 - 79,404,579 (+)NCBICelera
Cytogenetic Map4C3NCBI
cM Map437.89NCBI
Tyrp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85100,327,111 - 100,345,657 (+)NCBIGRCr8
mRatBN7.2595,280,982 - 95,299,516 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl595,280,982 - 95,299,516 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx597,659,552 - 97,678,085 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0599,480,692 - 99,499,221 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0599,470,354 - 99,488,887 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0598,387,291 - 98,406,083 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl598,387,291 - 98,406,083 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05102,430,674 - 102,449,645 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4599,518,306 - 99,537,289 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera593,854,189 - 93,872,732 (+)NCBICelera
Cytogenetic Map5q31NCBI
Tyrp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543415,913,968 - 15,931,740 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543415,913,208 - 15,932,193 (+)NCBIChiLan1.0ChiLan1.0
TYRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211111,825,175 - 112,995,653 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19111,831,122 - 113,001,599 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0912,502,610 - 12,550,203 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1912,950,831 - 12,996,808 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl912,950,831 - 12,996,799 (+)Ensemblpanpan1.1panPan2
TYRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11133,317,084 - 33,336,029 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1133,317,121 - 33,335,498 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1132,027,482 - 32,045,312 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01134,222,689 - 34,240,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1134,222,689 - 34,240,515 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11132,928,733 - 32,946,547 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01132,713,987 - 32,731,848 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01133,376,152 - 33,394,014 (+)NCBIUU_Cfam_GSD_1.0
TYRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1209,725,638 - 209,745,705 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11209,725,698 - 209,745,141 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21233,661,356 - 233,680,103 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TYRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11266,841,867 - 66,861,730 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1266,842,926 - 66,859,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603855,076,959 - 55,095,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tyrp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473617,011,115 - 17,029,322 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473617,011,092 - 17,028,689 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000003658   ⟹   ENSSTOP00000003274
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365396,537,509 - 6,556,513 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000041550   ⟹   ENSSTOP00000027928
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365396,537,509 - 6,556,513 (+)Ensembl
RefSeq Acc Id: XM_005327981   ⟹   XP_005328038
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947148,084,995 - 148,102,753 (+)NCBI
SpeTri2.0NW_0049365396,537,448 - 6,555,440 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328038 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003274.3
  ENSSTOP00000027928.1
GenBank Protein KAG3287254 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328038   ⟸   XM_005327981
- UniProtKB: I3M2P3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000027928   ⟸   ENSSTOT00000041550
Ensembl Acc Id: ENSSTOP00000003274   ⟸   ENSSTOT00000003658
Protein Domains
Tyrosinase copper-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003656 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003658.3 UniProtKB/TrEMBL
  ENSSTOT00000041550.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1280.10 UniProtKB/TrEMBL
InterPro Tyrosinase/Hemocyanin UniProtKB/TrEMBL
  Tyrosinase_Cu-bd UniProtKB/TrEMBL
  Unchr_di-copper_centre UniProtKB/TrEMBL
NCBI Gene Tyrp1 ENTREZGENE
PANTHER 5,6-DIHYDROXYINDOLE-2-CARBOXYLIC ACID OXIDASE UniProtKB/TrEMBL
  TYROSINASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Tyrosinase UniProtKB/TrEMBL
PRINTS TYROSINASE UniProtKB/TrEMBL
PROSITE TYROSINASE_1 UniProtKB/TrEMBL
  TYROSINASE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF48056 UniProtKB/TrEMBL
UniProt I3M2P3 ENTREZGENE, UniProtKB/TrEMBL